Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2695 ATGGCGGCTCGTAGGATATCATCCCTCTTATCTCGTTCCCTTGCTTCTTCACCTGCTTTCCTCTCTAAAGGGGGGAGGCTTAGAACCATTGGCAAATATAGCACAACGGCTGCTGTTGAAGACCCCATTGCTCCATCTGTGAAAGTAAATTACACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCTGTCTCAGGAAAAACCTTTCCCACACTGGACCCTAGGACTGGGGAAGTCATTGCCAATGTTGCTGAAGGTGATGCCAAAGATATTGATATTGCTGTTTCTGCTGCTCGTAAGGCATTTGATGAAGGGCCTTGGCCTAAAATGACTGCTTATGAAAGATCGAAGATACTTTTGCGATTTGCCGATTTGGTTGAAAAGCATGTCGAGGAAGTTGCAGCACTCGAAACTTGGGACAATGGGAAAACATATGAACAGTCCCTCATGCTGGAAGTTCCGATGTTTGTACGCCTCTTCCGATACTATGCTGGATGGGCCGATAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCGATTGGTGTGGCGGGTCAGATTATTCCATGGAACTTTCCTCTGGTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCCTGTGGGAATACTATTGTTCTGAAGACAGCCGAACAGACACCTTTGTCTGCTCTCTATGTGGCTAAGCTATTGCATGAGGCTGGTCTTCCCGAGGGCGTTATCAATATTGTTTCCGGTTATGGACCCACTGCGGGTGCTGCTCTTGCAAGTCATATGGAAGTTGATAAGCTTGCTTTTACGGGATCGACCGAAACAGGGAAGATTGTACTTGAACTAGCTGCAAGAAGCAATCTGAAGCCAGTAACTTTGGAACTTGGTGGAAAATCCCCTTTCATTGTATGCGAGGATGCCGATGTAGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGCTCTCGTACTTTTGTTCATGAAAAAGTATACGACGAGTTTATAGAAAAAGCAAGGAAACGAGCTGCGAACCGTGTAGTTGGTGATCCATTCCGAGGTGGAATTGAGCAAGGTCCTCAGGTCGATAGCGAACAATTCAAAAAGATTTTGAAATACATAAAATCTGGGATTGAAGGTGGAGCCACTCTAGAAGCAGGAGGTGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACCGTTTTCTCGAACGTCAAAGATGACATGAAAATTGCACAGGAGGAGATTTTTGGGCCTGTACAGACAATCTTGAAATACAAAGAGATTGATGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCTGCCGGGGTGTTTACTCAAAATATCGACACAGCAAACAGGCTGACCCGTGCGCTTCGAGTTGGGTCGGTGTGGATCAATTGCTTCGATATATTCGATGCTGCAGTTCCTTTTGGTGGGTACAAGATGAGTGGACATGGGAGAGAAAAGGGTATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTCTGCACAACCCTGCTTGGCTTTAG 1599 46.84 MAARRISSLLSRSLASSPAFLSKGGRLRTIGKYSTTAAVEDPIAPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDAKDIDIAVSAARKAFDEGPWPKMTAYERSKILLRFADLVEKHVEEVAALETWDNGKTYEQSLMLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLVMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLLHEAGLPEGVINIVSGYGPTAGAALASHMEVDKLAFTGSTETGKIVLELAARSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFIEKARKRAANRVVGDPFRGGIEQGPQVDSEQFKKILKYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMKIAQEEIFGPVQTILKYKEIDEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLHNPAWL 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43232244 43236442 - Sed0026181.1 Sed03g2695 708182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2695 532 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 298 305 IPR029510 GO:0016491(InterPro)
Sed03g2695 532 SUPERFAMILY ALDH-like 49 527 IPR016161 GO:0016491(InterPro)
Sed03g2695 532 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 326 337 IPR016160 GO:0016491(InterPro)
Sed03g2695 532 FunFam Mitochondrial aldehyde dehydrogenase 2 304 493 - -
Sed03g2695 532 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 56 520 IPR016162 GO:0016491(InterPro)
Sed03g2695 532 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 524 - GO:0004029(PANTHER)
Sed03g2695 532 CDD ALDH_F2BC 49 524 - -
Sed03g2695 532 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 302 491 IPR016163 GO:0016620(InterPro)
Sed03g2695 532 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 56 327 - -
Sed03g2695 532 Pfam Aldehyde dehydrogenase family 60 522 IPR015590 GO:0016491(InterPro)
Sed03g2695 532 FunFam Aldehyde dehydrogenase, putative 494 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2695 Sed-Chr3:43232244 Sed12g1882 Sed-Chr12:30009036 8.00E-250 dispersed
Sed03g2695 Sed-Chr3:43232244 Sed12g1865 Sed-Chr12:29840797 5.50E-166 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2695 K00128 - csv:101202756 978.008