Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2727 ATGGGGACAGAGCTTATTAGAGTTTGTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTTGAGCCATATATATCCTTTCCTTTAGGGAAGTTGCACAATCATGAGAAACAAGATGTTCATGTCCCTGTTAGTTTGTCGACAACCGTCTCTGAGTCACAACCAGTTAAAGTGGAAACTGAGGTGGAAGTTACCGATGTTGCAAAAGTAACAAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTCCAATGAAGAGCTTGATACTAAGTCTCTAGATCAGAATTTTTCTTCAAAGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACATTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGACACTTTGACATATATAGCAAGCATCCGAGCAAAAGCAGAACCATTTGGGATTTGTCGTATTGTTCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAAAATATTTGGGAGGGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTTCAGAACCGGGACTCAATAAGAAAGAACTTAAGGGCTTGCACTCAAATGAGAAGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTGCCACCTTAAATGGAAAAAATGGAGATGCGGGGTCTAATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCTGATTTTACTTTAGAATCGTTTAAAAGATATGCAGATGATTTTAAGTCTCAGTATTTTAGCAAACCACTCTCTGGTACTGCAAAGGGATGTAATCCATCCATGCCGCAAGAGAATGGACATTGGGAACCATCTGTGGAAATGATTGAGGGTGAGTATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTTTATGGGGCTGATCTGGAAACTGGAGAGTTTGGCAGTGGTTTTCCAAAGAGTTTCTGTCAAGAGGGCTCCACATCAGATGAAGAGAAGTATATAAAATCTGGCTGGAACCTGAATAACTTCCCTAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTGCCATGGCTATATGTTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCATTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGTAAATTAGAAGAGGCTATGAGAAAACATTTACCCGACCTCTTTGAAGAACAACCTGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATCTTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCAGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGGTTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGATTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTCAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTATTGCTTGGTGCCGCAAGAGAAGCCGTGAGAGCACACTGGGAGCTTAATTTACTGAAAAAGAACACTTCGGATAACTTTAGATGGAATAAAGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGGCACGTGTTGAGATGGAGTGTGCATGGAGAAACCTTCATTGCAGTTCTTCTCAGGCAATGAAGATGGAAAGTGACTTTGATGCCTCCAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTACATCTGTCTGCAGTCGGTTGTCGCTGTTCACTAGATAAATATGCATGCTTGAATCATGCAAAGCAACTGTGCTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACGTCAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAAATCTCAATCATCAACCAATCCCCATGGGAGTTCTCGATTGAAAGATTTCTTGAGGCAATCTTCATTACTGACAACTCTAACTGCTATTGTCAGCCCTTCTCATCATGCTGAAAAGGTATCTGAAGTTCCTGCTTCTTTTCTAGAAGATAAGAAGGTAATTTCCAAACTTGATGGATCTGGGGAGGTAGTTGAGCAGCAAAATCATAAAATTGAGGTGAAAAGAGAAAACAACGAGCTCGTGGCAAGCAATTTGAGGCATGCAGGTTCACAGTTCTCTAAGGAGGATACAAATGCTCTGAATTTGGTAGAAGTAAAAAATAGAATGGATAAAACGTGTCCTGAAAATGTCATACTACTAAGTGACGATGAAGGTGATGAGCATAAGAAGACTATTCCAAATGGCTTAACTGAAAGTTCATTAGTAAAGCAGCCGGAAACTTCAGATCGATTCACTGATGTAGATTCTAAGGTTGGACTGTGCAACTACAACGAAAATGCAATCGTGCACACCCCGGTGACGGATGCAACAATCATGGAAGAAAAGGAAGTAAAAAAATTGAATAATTGCCAGTCGAGCTTCGAACCTTTAAATAATAAACAGTCTCAAAACATTAATTTATCAATTAGAAAGACAGCTAATGCTGTTCAGAACAACAGTTTTTCAGAAGCAGGATTAGGTCATAGTAAAGTATTTCCAGCTTCAGTAGATACTGATTCTAAAAAACCACATACATGTGGCTCTGCGAAATCGAGTGAGGGTAGGCATGGAAATGGGGGAACAAGTGCTACATCTTGTTTGTTAGACACTAATAGAACTACTGGAAACTTATCTTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGGATGGCAAAGGTAGTTCGTAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATCGTGCTCTCGGGAAAGTCTTGGTCAAACAGCCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAGGTATATAAGCATTTCAGATCCATCAACTTTCTGTTATTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCATTCATGTTACTGCTGCCAGATGTTGGGAGTTGGTTAGAGACCGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTGGATGGCTTAGAGATGTTCGGGTTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTAGTGAGTATTGGGACTCTCGGCCTTATTCTCGGCCTCATGTCCAGAGTCCACAACCGTCTCAGTCAACAGAAATTAGTCGAAACTTGCAAGCAACCGAAAGAAACAACAGGGGCAATCCTAGCCCTTCTGGAGTTGATATATTACTTGGGAGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAACAAGACAACAGTTGATCGAGACGTACTGACTCGACTCCTTAACGAAGAGATTCAAAGTCATGAAAGATGA 3693 42.0 MGTELIRVCVEEDSDDFPSVPPGFEPYISFPLGKLHNHEKQDVHVPVSLSTTVSESQPVKVETEVEVTDVAKVTRSLRRKPCINYRQYDYCSNEELDTKSLDQNFSSKPSLSKGVIRGCPQCSNCQKVVARWRPEESCRPDIEDAPVFYPTEEEFGDTLTYIASIRAKAEPFGICRIVPPSSWKPPCPLKQKNIWEGSKFATRVQRIDKLQNRDSIRKNLRACTQMRRKRRRVNRKGVDVATLNGKNGDAGSNEAERFGFDPGPDFTLESFKRYADDFKSQYFSKPLSGTAKGCNPSMPQENGHWEPSVEMIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSFCQEGSTSDEEKYIKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYRQQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTSDNFRWNKVCGKDGVLARAFKARVEMECAWRNLHCSSSQAMKMESDFDASNERECSSCLFDLHLSAVGCRCSLDKYACLNHAKQLCSCAWEERFFLFRYDVSELNILLEALEGKLSAVYRWARQDLGLALSSSRELKSQSSTNPHGSSRLKDFLRQSSLLTTLTAIVSPSHHAEKVSEVPASFLEDKKVISKLDGSGEVVEQQNHKIEVKRENNELVASNLRHAGSQFSKEDTNALNLVEVKNRMDKTCPENVILLSDDEGDEHKKTIPNGLTESSLVKQPETSDRFTDVDSKVGLCNYNENAIVHTPVTDATIMEEKEVKKLNNCQSSFEPLNNKQSQNINLSIRKTANAVQNNSFSEAGLGHSKVFPASVDTDSKKPHTCGSAKSSEGRHGNGGTSATSCLLDTNRTTGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVRYISISDPSTFCYYVSEILDAGREGPLFMVVLEHCPSEVFIHVTAARCWELVRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCSEYWDSRPYSRPHVQSPQPSQSTEISRNLQATERNNRGNPSPSGVDILLGRLLKKANLEELNSLYTLLNDNKTTVDRDVLTRLLNEEIQSHER 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43717478 43731000 + Sed0008276.1 Sed03g2727 708214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2727 1230 ProSiteProfiles FYR domain FYRC motif profile. 1054 1144 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 Gene3D - 1002 1138 - -
Sed03g2727 1230 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 928 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed03g2727 1230 Pfam F/Y-rich N-terminus 1009 1051 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 SMART cupin_9 359 525 IPR003347 -
Sed03g2727 1230 SMART fyrc_3 1058 1152 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 SMART JmjN_1 144 185 IPR003349 -
Sed03g2727 1230 Pfam F/Y rich C-terminus 1056 1140 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 ProSiteProfiles FYR domain FYRN motif profile. 994 1052 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 SMART fyrn_3 1008 1052 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 Pfam jmjN domain 146 179 IPR003349 -
Sed03g2727 1230 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Sed03g2727 1230 SUPERFAMILY Clavaminate synthase-like 314 552 - -
Sed03g2727 1230 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Sed03g2727 1230 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Sed03g2727 1230 Gene3D Cupin 130 509 - -
Sed03g2727 1230 FunFam Putative lysine-specific demethylase JMJ16 1000 1138 - -
Sed03g2727 1230 MobiDBLite consensus disorder prediction 928 957 - -
Sed03g2727 1230 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3884 Sed-Chr1:68080035 Sed03g2727 Sed-Chr3:43717478 3.20E-96 dispersed
Sed01g3885 Sed-Chr1:68080035 Sed03g2727 Sed-Chr3:43717478 3.10E-96 dispersed
Sed03g2727 Sed-Chr3:43717478 Sed08g2838 Sed-Chr8:39638368 1.50E-227 dispersed
Sed03g2727 Sed-Chr3:43717478 Sed08g2837 Sed-Chr8:39638368 1.50E-227 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37953 PF02373 JmjC 1.10E-44 CL0029 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2727 K11446 - csv:101208186 2075.44