Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2727 ATGGGGACAGAGCTTATTAGAGTTTGTGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTTGAGCCATATATATCCTTTCCTTTAGGGAAGTTGCACAATCATGAGAAACAAGATGTTCATGTCCCTGTTAGTTTGTCGACAACCGTCTCTGAGTCACAACCAGTTAAAGTGGAAACTGAGGTGGAAGTTACCGATGTTGCAAAAGTAACAAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTCCAATGAAGAGCTTGATACTAAGTCTCTAGATCAGAATTTTTCTTCAAAGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACATTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGACACTTTGACATATATAGCAAGCATCCGAGCAAAAGCAGAACCATTTGGGATTTGTCGTATTGTTCCACCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAAAATATTTGGGAGGGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGATAAGCTTCAGAACCGGGACTCAATAAGAAAGAACTTAAGGGCTTGCACTCAAATGAGAAGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTGCCACCTTAAATGGAAAAAATGGAGATGCGGGGTCTAATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCTGATTTTACTTTAGAATCGTTTAAAAGATATGCAGATGATTTTAAGTCTCAGTATTTTAGCAAACCACTCTCTGGTACTGCAAAGGGATGTAATCCATCCATGCCGCAAGAGAATGGACATTGGGAACCATCTGTGGAAATGATTGAGGGTGAGTATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTTTATGGGGCTGATCTGGAAACTGGAGAGTTTGGCAGTGGTTTTCCAAAGAGTTTCTGTCAAGAGGGCTCCACATCAGATGAAGAGAAGTATATAAAATCTGGCTGGAACCTGAATAACTTCCCTAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTGCCATGGCTATATGTTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCATTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGTAAATTAGAAGAGGCTATGAGAAAACATTTACCCGACCTCTTTGAAGAACAACCTGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATCTTGAAATCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCAGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGGTTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGATTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTCAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTATTGCTTGGTGCCGCAAGAGAAGCCGTGAGAGCACACTGGGAGCTTAATTTACTGAAAAAGAACACTTCGGATAACTTTAGATGGAATAAAGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGGCACGTGTTGAGATGGAGTGTGCATGGAGAAACCTTCATTGCAGTTCTTCTCAGGCAATGAAGATGGAAAGTGACTTTGATGCCTCCAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTACATCTGTCTGCAGTCGGTTGTCGCTGTTCACTAGATAAATATGCATGCTTGAATCATGCAAAGCAACTGTGCTCTTGTGCTTGGGAAGAGAGATTTTTTCTCTTTCGCTATGACGTCAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTTCATCGAGGGAGTTGAAATCTCAATCATCAACCAATCCCCATGGGAGTTCTCGATTGAAAGATTTCTTGAGGCAATCTTCATTACTGACAACTCTAACTGCTATTGTCAGCCCTTCTCATCATGCTGAAAAGGTATCTGAAGTTCCTGCTTCTTTTCTAGAAGATAAGAAGGTAATTTCCAAACTTGATGGATCTGGGGAGGTAGTTGAGCAGCAAAATCATAAAATTGAGGTGAAAAGAGAAAACAACGAGCTCGTGGCAAGCAATTTGAGGCATGCAGGTTCACAGTTCTCTAAGGAGGATACAAATGCTCTGAATTTGGTAGAAGTAAAAAATAGAATGGATAAAACGTGTCCTGAAAATGTCATACTACTAAGTGACGATGAAGGTGATGAGCATAAGAAGACTATTCCAAATGGCTTAACTGAAAGTTCATTAGTAAAGCAGCCGGAAACTTCAGATCGATTCACTGATGTAGATTCTAAGGTTGGACTGTGCAACTACAACGAAAATGCAATCGTGCACACCCCGGTGACGGATGCAACAATCATGGAAGAAAAGGAAGTAAAAAAATTGAATAATTGCCAGTCGAGCTTCGAACCTTTAAATAATAAACAGTCTCAAAACATTAATTTATCAATTAGAAAGACAGCTAATGCTGTTCAGAACAACAGTTTTTCAGAAGCAGGATTAGGTCATAGTAAAGTATTTCCAGCTTCAGTAGATACTGATTCTAAAAAACCACATACATGTGGCTCTGCGAAATCGAGTGAGGGTAGGCATGGAAATGGGGGAACAAGTGCTACATCTTGTTTGTTAGACACTAATAGAACTACTGGAAACTTATCTTGCAATCAAGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGGATGGCAAAGGTAGTTCGTAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATCGTGCTCTCGGGAAAGTCTTGGTCAAACAGCCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAGGTATATAAGCATTTCAGATCCATCAACTTTCTGTTATTATGTTTCTGAAATTCTCGATGCTGGACGGGAAGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCATTCATGTTACTGCTGCCAGATGTTGGGAGTTGGTTAGAGACCGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTGGATGGCTTAGAGATGTTCGGGTTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTAGTGAGTATTGGGACTCTCGGCCTTATTCTCGGCCTCATGTCCAGAGTCCACAACCGTCTCAGTCAACAGAAATTAGTCGAAACTTGCAAGCAACCGAAAGAAACAACAGGGGCAATCCTAGCCCTTCTGGAGTTGATATATTACTTGGGAGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAACAAGACAACAGTTGATCGAGACGTACTGACTCGACTCCTTAACGAAGAGATTCAAAGTCATGAAAGATGA 3693 42.0 MGTELIRVCVEEDSDDFPSVPPGFEPYISFPLGKLHNHEKQDVHVPVSLSTTVSESQPVKVETEVEVTDVAKVTRSLRRKPCINYRQYDYCSNEELDTKSLDQNFSSKPSLSKGVIRGCPQCSNCQKVVARWRPEESCRPDIEDAPVFYPTEEEFGDTLTYIASIRAKAEPFGICRIVPPSSWKPPCPLKQKNIWEGSKFATRVQRIDKLQNRDSIRKNLRACTQMRRKRRRVNRKGVDVATLNGKNGDAGSNEAERFGFDPGPDFTLESFKRYADDFKSQYFSKPLSGTAKGCNPSMPQENGHWEPSVEMIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSFCQEGSTSDEEKYIKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYRQQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTSDNFRWNKVCGKDGVLARAFKARVEMECAWRNLHCSSSQAMKMESDFDASNERECSSCLFDLHLSAVGCRCSLDKYACLNHAKQLCSCAWEERFFLFRYDVSELNILLEALEGKLSAVYRWARQDLGLALSSSRELKSQSSTNPHGSSRLKDFLRQSSLLTTLTAIVSPSHHAEKVSEVPASFLEDKKVISKLDGSGEVVEQQNHKIEVKRENNELVASNLRHAGSQFSKEDTNALNLVEVKNRMDKTCPENVILLSDDEGDEHKKTIPNGLTESSLVKQPETSDRFTDVDSKVGLCNYNENAIVHTPVTDATIMEEKEVKKLNNCQSSFEPLNNKQSQNINLSIRKTANAVQNNSFSEAGLGHSKVFPASVDTDSKKPHTCGSAKSSEGRHGNGGTSATSCLLDTNRTTGNLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVRYISISDPSTFCYYVSEILDAGREGPLFMVVLEHCPSEVFIHVTAARCWELVRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCSEYWDSRPYSRPHVQSPQPSQSTEISRNLQATERNNRGNPSPSGVDILLGRLLKKANLEELNSLYTLLNDNKTTVDRDVLTRLLNEEIQSHER 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43717478 43731000 + Sed0008276.1 Sed03g2727 708214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2727 1230 ProSiteProfiles FYR domain FYRC motif profile. 1054 1144 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 Gene3D - 1002 1138 - -
Sed03g2727 1230 PANTHER LYSINE-SPECIFIC DEMETHYLASE 131 928 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed03g2727 1230 Pfam F/Y-rich N-terminus 1009 1051 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 SMART cupin_9 359 525 IPR003347 -
Sed03g2727 1230 SMART fyrc_3 1058 1152 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 SMART JmjN_1 144 185 IPR003349 -
Sed03g2727 1230 Pfam F/Y rich C-terminus 1056 1140 IPR003889 GO:0005634(InterPro)
Sed03g2727 1230 ProSiteProfiles FYR domain FYRN motif profile. 994 1052 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 SMART fyrn_3 1008 1052 IPR003888 GO:0005634(InterPro)
Sed03g2727 1230 Pfam jmjN domain 146 179 IPR003349 -
Sed03g2727 1230 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Sed03g2727 1230 SUPERFAMILY Clavaminate synthase-like 314 552 - -
Sed03g2727 1230 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Sed03g2727 1230 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Sed03g2727 1230 Gene3D Cupin 130 509 - -
Sed03g2727 1230 FunFam Putative lysine-specific demethylase JMJ16 1000 1138 - -
Sed03g2727 1230 MobiDBLite consensus disorder prediction 928 957 - -
Sed03g2727 1230 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2727 K11446 - - csv:101208186 2075.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3884 Sed-Chr1:68080035 Sed03g2727 Sed-Chr3:43717478 3.20E-96 dispersed
Sed01g3885 Sed-Chr1:68080035 Sed03g2727 Sed-Chr3:43717478 3.10E-96 dispersed
Sed03g2727 Sed-Chr3:43717478 Sed08g2838 Sed-Chr8:39638368 1.50E-227 dispersed
Sed03g2727 Sed-Chr3:43717478 Sed08g2837 Sed-Chr8:39638368 1.50E-227 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g2727 . 1 1227 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1235.3
Sed08g2837 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2838 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2839 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2840 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed01g1923 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
Sed01g1924 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37953 PF02373 JmjC 1.10E-44 CL0029 Sed TR