Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2755 | ATGGCGTCAAGCTCCTCGAATTCGCCATGTGCGGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAGTGCGTTTTTGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCCAATGTTCACAAGGTATTCGGCGCCAGCAATGTCACCAAACTCCTCAACGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTACGAGGCCGATATGCGCCTCCGCGATCCTGTTTACGGCTGCGTCGGCGTAATCTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATACCAAAACCTAGGCCTCGGAAACCAGGCCGCCGCCCTGATCTCGCCGCCTTCCGCCGTCGCCGCCGCCCATGGACAGCGGAGCCACCAGGCGGCGTTCAATTTCGCGAGAGATCAACCGCACGGCCTCCTCTATCACGAGCAGTTTTTCCCTCGAGATCAGCAGCAACAGCAACAGATGATGCTGCGACGGAGCTTCGACGGCGGTGCCAACTACGACGGCGGACTTCTGGCCGTCAACGTCACCGCTAGCATCGGAAACCTCGGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGCCGCGGTGCTCTCGATCATTCTTAG | 666 | 59.01 | MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGLGNQAAALISPPSAVAAAHGQRSHQAAFNFARDQPHGLLYHEQFFPRDQQQQQQMMLRRSFDGGANYDGGLLAVNVTASIGNLGHQFQQPRAAAGDDRRGALDHS | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 43982426 | 43983091 | - | Sed0016404.1 | Sed03g2755 | 708242 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2755 | 221 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Sed03g2755 | 221 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 157 | - | - | |
Sed03g2755 | 221 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0369 | Sed-Chr3:2229388 | Sed03g2755 | Sed-Chr3:43982426 | 6.90E-35 | dispersed | |
Sed03g2755 | Sed-Chr3:43982426 | Sed05g3367 | Sed-Chr5:42875651 | 1.60E-47 | dispersed | |
Sed03g2755 | Sed-Chr3:43982426 | Sed01g0080 | Sed-Chr1:743315 | 1.50E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37954 | PF03195 | LOB | 4.30E-43 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2755 | - | - | - | 0.0 |