Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2755 ATGGCGTCAAGCTCCTCGAATTCGCCATGTGCGGCCTGCAAATTTCTCCGGCGAAAATGCCAGCCGGAGTGCGTTTTTGCGCCGTATTTTCCGCCGGACCAGCCGCAGAAATTCGCCAATGTTCACAAGGTATTCGGCGCCAGCAATGTCACCAAACTCCTCAACGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTACGAGGCCGATATGCGCCTCCGCGATCCTGTTTACGGCTGCGTCGGCGTAATCTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATACCAAAACCTAGGCCTCGGAAACCAGGCCGCCGCCCTGATCTCGCCGCCTTCCGCCGTCGCCGCCGCCCATGGACAGCGGAGCCACCAGGCGGCGTTCAATTTCGCGAGAGATCAACCGCACGGCCTCCTCTATCACGAGCAGTTTTTCCCTCGAGATCAGCAGCAACAGCAACAGATGATGCTGCGACGGAGCTTCGACGGCGGTGCCAACTACGACGGCGGACTTCTGGCCGTCAACGTCACCGCTAGCATCGGAAACCTCGGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGCCGCGGTGCTCTCGATCATTCTTAG 666 59.01 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGLGNQAAALISPPSAVAAAHGQRSHQAAFNFARDQPHGLLYHEQFFPRDQQQQQQMMLRRSFDGGANYDGGLLAVNVTASIGNLGHQFQQPRAAAGDDRRGALDHS 221
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 43982426 43983091 - Sed0016404.1 Sed03g2755 708242
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2755 221 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Sed03g2755 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 157 - -
Sed03g2755 221 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0369 Sed-Chr3:2229388 Sed03g2755 Sed-Chr3:43982426 6.90E-35 dispersed
Sed03g2755 Sed-Chr3:43982426 Sed05g3367 Sed-Chr5:42875651 1.60E-47 dispersed
Sed03g2755 Sed-Chr3:43982426 Sed01g0080 Sed-Chr1:743315 1.50E-48 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37954 PF03195 LOB 4.30E-43 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2755 - - - 0.0