Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2760 | ATGTTGGACGGTGGTCAAAAGTTTCCTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTTTACCATAAACTTGGTGAAGGAACCAACATGTCTATTGACAGCTTTGCGAGCTTGCAAACGAGCCATGATGGAGGGTCTGTGGCCATGTCTGTAGATAACAGCAGTGTAGGATCTAATGAATCTCACACCCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCGAATGACAACCATACTTTTCAACATAGTGTGAACCGTCGCGGAAGAGTTACACATCACCTGAGTGATGATGCGCTAGCCCAAGCTTTATTTGATAGTAATACACCCACCCTTGGCCTTGAAAAATTTGACAAGTGGATTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCATTTGGAAAACTGTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATATTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAATTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAGGCACCCAAATATTGTCCGGTTTATCGGAGCATGTCATAAGCGAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAGAGTCGCTCTGTCCCTCTGAAATTAGCTGTCAAACAAGCATTGGATGTTGCCAAGGGGATGGAGTATGTTCATGGCTTTGGGCTGATTCACAGAGACTTGAAATCAGACAACCTTTTAATTTTTGCAGATAAATCTATCAAGGTTGCTGACTTTGGGGTGGCCCGGATTGAGGTGCAGACTGAGGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACTTGTATAGTTTTGGCATCGTTCTCTGGGAACTGATAACTGGAATGCTTCCATTCCAGAACATGACAGCCGTTCAGGCCGCATTTGCAGTTGTTAACAAGGGTGTCCGTCCTATCATTCCCAACGACTGCCTACCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCCGATGTCAGGCCATCATTTACCGAGGTCGTCAAAATGCTCGAGAATGCGCAGAATGAGATCATGACTACCGTGCGCAAGGCTCGTTTCAGGTGTTGCATGACGCAGCCGATGACAACAGACTGA | 1242 | 46.46 | MLDGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSHDGGSVAMSVDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALAQALFDSNTPTLGLEKFDKWILDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLRHPNIVRFIGACHKRMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVAKGMEYVHGFGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVKMLENAQNEIMTTVRKARFRCCMTQPMTTD | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 44050777 | 44055187 | + | Sed0026095.1 | Sed03g2760 | 708247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2760 | 413 | FunFam | serine/threonine-protein kinase HT1 | 215 | 408 | - | - | |
Sed03g2760 | 413 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 214 | - | - | |
Sed03g2760 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 210 | 223 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 357 | 379 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 248 | 266 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 313 | 335 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 294 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 65 | 388 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed03g2760 | 413 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 410 | - | - | |
Sed03g2760 | 413 | FunFam | Serine/threonine-protein kinase isoform 1 | 122 | 214 | - | - | |
Sed03g2760 | 413 | CDD | STKc_MAP3K-like | 139 | 386 | - | - | |
Sed03g2760 | 413 | SMART | serkin_6 | 132 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 386 | IPR011009 | - | |
Sed03g2760 | 413 | ProSiteProfiles | Protein kinase domain profile. | 132 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g2760 | 413 | Pfam | Protein tyrosine and serine/threonine kinase | 133 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2760 | Sed-Chr3:44050777 | Sed08g2502 | Sed-Chr8:37827648 | 1.30E-77 | dispersed | |
Sed03g2760 | Sed-Chr3:44050777 | Sed14g1459 | Sed-Chr14:23070659 | 7.40E-78 | transposed | |
Sed03g2760 | Sed-Chr3:44050777 | Sed01g1660 | Sed-Chr1:12067710 | 7.40E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78939 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2760 | - | - | - | 0.0 |