Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2760 ATGTTGGACGGTGGTCAAAAGTTTCCTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTTTACCATAAACTTGGTGAAGGAACCAACATGTCTATTGACAGCTTTGCGAGCTTGCAAACGAGCCATGATGGAGGGTCTGTGGCCATGTCTGTAGATAACAGCAGTGTAGGATCTAATGAATCTCACACCCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCGAATGACAACCATACTTTTCAACATAGTGTGAACCGTCGCGGAAGAGTTACACATCACCTGAGTGATGATGCGCTAGCCCAAGCTTTATTTGATAGTAATACACCCACCCTTGGCCTTGAAAAATTTGACAAGTGGATTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCATTTGGAAAACTGTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATATTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAATTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAGGCACCCAAATATTGTCCGGTTTATCGGAGCATGTCATAAGCGAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAGAGTCGCTCTGTCCCTCTGAAATTAGCTGTCAAACAAGCATTGGATGTTGCCAAGGGGATGGAGTATGTTCATGGCTTTGGGCTGATTCACAGAGACTTGAAATCAGACAACCTTTTAATTTTTGCAGATAAATCTATCAAGGTTGCTGACTTTGGGGTGGCCCGGATTGAGGTGCAGACTGAGGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACTTGTATAGTTTTGGCATCGTTCTCTGGGAACTGATAACTGGAATGCTTCCATTCCAGAACATGACAGCCGTTCAGGCCGCATTTGCAGTTGTTAACAAGGGTGTCCGTCCTATCATTCCCAACGACTGCCTACCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCCGATGTCAGGCCATCATTTACCGAGGTCGTCAAAATGCTCGAGAATGCGCAGAATGAGATCATGACTACCGTGCGCAAGGCTCGTTTCAGGTGTTGCATGACGCAGCCGATGACAACAGACTGA 1242 46.46 MLDGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSHDGGSVAMSVDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALAQALFDSNTPTLGLEKFDKWILDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLRHPNIVRFIGACHKRMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVAKGMEYVHGFGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVKMLENAQNEIMTTVRKARFRCCMTQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44050777 44055187 + Sed0026095.1 Sed03g2760 708247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2760 413 FunFam serine/threonine-protein kinase HT1 215 408 - -
Sed03g2760 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Sed03g2760 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 PANTHER SERINE-THREONINE PROTEIN KINASE 65 388 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed03g2760 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 Gene3D Transferase(Phosphotransferase) domain 1 215 410 - -
Sed03g2760 413 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Sed03g2760 413 CDD STKc_MAP3K-like 139 386 - -
Sed03g2760 413 SMART serkin_6 132 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 SUPERFAMILY Protein kinase-like (PK-like) 115 386 IPR011009 -
Sed03g2760 413 ProSiteProfiles Protein kinase domain profile. 132 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2760 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2760 Sed-Chr3:44050777 Sed08g2502 Sed-Chr8:37827648 1.30E-77 dispersed
Sed03g2760 Sed-Chr3:44050777 Sed14g1459 Sed-Chr14:23070659 7.40E-78 transposed
Sed03g2760 Sed-Chr3:44050777 Sed01g1660 Sed-Chr1:12067710 7.40E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78939 PF07714 PK_Tyr_Ser-Thr 4.00E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2760 - - - 0.0