Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2766 ATGGCGAAAGGCGGAGGCGGAGGAGGGAAGAAGGAGGAATCGGTGGCGGTGGCGATCGACAAAGACAAATTCAGCCAACAGGCTTTGAAATGGACGATTGAACGCCTGTTGAGTAGAGGCCAGATTCTTACTTTGCTTCATGTCAAGCACAAGCCATCCAATTCTAGTAATTCCATCAATAATCATAATCATAATCATAATGGTGGCGCCAATTCGGATTCCGACAAACAACAGCTTGAGAATCATCATCAACATGTCAAATCAGATTCCTTCTTCCTTCCCTTTCGTTGCGTCTGCACCAGAAGCAATATACCATGCAATGAAGTGATGTTGGAGGATGGAGATATTTCAAAAACATTAATTAATTATGTCAACAAAAATGTTATAGACATTTTAGTGCTTGGTGCCCCTTCAAGAACCGGCATTGTGAAGAGATTCAAGACAGATATCCCAAGCATTGTGTCAAAAGGAGTACCAGACTTCTGCACAGTTTACATTATTGGTAACAAAGGCAAGGTTTCTTCAAGCCGACAATCCACAGCTCCGGCGCCCGCAAAGCCCGTTGCTCCGATGCGCAACCAGCTGAAGATCATCCCACCACGCCCGCAGCTGTTGCATCAGCTCACAAACGTCGCCGAGGTTGCGTCTGAGTACCCACGCTTCCAGCCATCTAAACATTTAGAGACTCAAGATAGCACACCTTTCCGTTCCCTTCCGGATGATTTTGAAATCAGGTCACCGTTTACAAGGCCCGGTTCAAGGGCTTCGATGAGCAAAGGGCATGATCTGGATTCTGACATATCATTCGTGAGCAGCGGCAGGCGGAGCATGGACCGGTTCCACCCATCGGCTTGGAACACAGGCAGCGAGTCGTTTCGGCTTTCTAATGCCTCGGAGTTCGACATTTTCAGCCCGGGTTCATCTTCGCCTTCGCCTTTGTTAGAAATGGGAGGAGGAATAAAGTTCATTGATGATCATGATCATAATCATAATCATCATAATTATTATAATAACAACAACAATGCCTCTCCTAACCATTACCCTCAGGAAACATTATCTTGCTCCTTAGAAAGTGATACATTCTCTTGGTCTTCCAATCCTCATGTCCAGGATGATGTTGAAGCTGAGATGAGAAGGCTGAAATTGGAGCTGAAACAAACAATGGATATGTACAGTACAGCCTGCAAAGAAGCCTTAAACTCCAAGCAAAAGGCGAACGAACTCCATCGCTGGAAACTCGAAGAAGAACACCGAATCGAAGCGGCGAAAATGGCGGAGGAAGCAGCATTGGCAATCGCGGAGAAGGAGAAGCAGAAATGCAAAGCGGCATTGGAGGCTGCCGAAGCCGCGCAGAGAATTGCAGCATTGGAGGCCCGAAAACGAGCAAGCGTGGAGAAAATGGCGGACATGGAAGCAGAGGAATCGATCACGGGATTCGGCCGTGGAGAAATCGGATACAGGAAGTACACGATCCAGGAAATCGAAACCGCCACGAACGGCTTCTCCGACGGTTTGAAGATCGGGGAAGGCGGTTACGGTCCTGTCTTCCGTGGAGTACTGGACCACACGCCGGTGGCGATCAAGGTCCTCCGCCCGGACGCCGCTCACGGCCGATCGCAATTTCAACAAGAGGTGGAGGTTCTAAGCTGTATTCGCCATCCAAACATGGTTCTCCTCCTCGGAGCATGTCCAGAGAAGGGTTGTTTAGTGTATGAATACATGGGGAAAGGTAGCTTAGAGGATTGTCTCTTTCGAAAACCAGGGGATCCAGTTCTTCCCTGGCAGTTACGGTTTCGGATCGCGGCGGAGATCGCAACCGGACTCTTGTTCCTGCATCAAACTAGACCAGAGCCGATCGTGCATCGAGATCTAAAACCGGGGAACATATTGCTAGATCAGAACTACGTGAGTAAAATCAGCGACGTGGGGCTAGCGAGGCTGGTGCCTCCATCGGTGGCGGATACGGTTACGCAGTATCGAATGACGGCCACGGCGGGGACGTTCTTCTACATCGATCCGGAGTATCAACAAACAGGATTGCTTGGGATCAAATCGGACATTTACTCGCTGGGAGTGATGCTTCTGCAGATAATAACGGGGAGGCCGCCGATCGGGCTGTCGCACTCGGTGGGGCGGGCGATTGAGAAGGGGAAATTTGAACAGATGCTTGATCCGGAAGTGAAGGACTGGCCGGTTCAAGATGCCTTGAAGTTCGCCAAGCTTTCGATTCAATGCGCAGAGATGAGGAAGAAAGATCGGCCCGATCTTGGGAAGGTCGTGCTGCCCGAGCTTAATCGACTCCGAGCCATGGCCGAAGACAGCATGGGATTTCACCCCTTCAAGATCGACAGTTTGCCTTCATCCCCATCTACAACCCAAGAACTGACATGGATTGAGAGCTCAGATAACCAATCAGGTAGCAGCACGTCATCATATTCAGACAGAAGACCTTCTAGGCTTGACTAG 2466 49.64 MAKGGGGGGKKEESVAVAIDKDKFSQQALKWTIERLLSRGQILTLLHVKHKPSNSSNSINNHNHNHNGGANSDSDKQQLENHHQHVKSDSFFLPFRCVCTRSNIPCNEVMLEDGDISKTLINYVNKNVIDILVLGAPSRTGIVKRFKTDIPSIVSKGVPDFCTVYIIGNKGKVSSSRQSTAPAPAKPVAPMRNQLKIIPPRPQLLHQLTNVAEVASEYPRFQPSKHLETQDSTPFRSLPDDFEIRSPFTRPGSRASMSKGHDLDSDISFVSSGRRSMDRFHPSAWNTGSESFRLSNASEFDIFSPGSSSPSPLLEMGGGIKFIDDHDHNHNHHNYYNNNNNASPNHYPQETLSCSLESDTFSWSSNPHVQDDVEAEMRRLKLELKQTMDMYSTACKEALNSKQKANELHRWKLEEEHRIEAAKMAEEAALAIAEKEKQKCKAALEAAEAAQRIAALEARKRASVEKMADMEAEESITGFGRGEIGYRKYTIQEIETATNGFSDGLKIGEGGYGPVFRGVLDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPEKGCLVYEYMGKGSLEDCLFRKPGDPVLPWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDQNYVSKISDVGLARLVPPSVADTVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITGRPPIGLSHSVGRAIEKGKFEQMLDPEVKDWPVQDALKFAKLSIQCAEMRKKDRPDLGKVVLPELNRLRAMAEDSMGFHPFKIDSLPSSPSTTQELTWIESSDNQSGSSTSSYSDRRPSRLD 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44119791 44129758 + Sed0024253.1 Sed03g2766 708253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2766 821 SUPERFAMILY Protein kinase-like (PK-like) 484 760 IPR011009 -
Sed03g2766 821 Gene3D Phosphorylase Kinase; domain 1 483 573 - -
Sed03g2766 821 MobiDBLite consensus disorder prediction 52 75 - -
Sed03g2766 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2766 821 Coils Coil 370 390 - -
Sed03g2766 821 ProSiteProfiles Protein kinase domain profile. 501 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2766 821 FunFam Os07g0541700 protein 574 664 - -
Sed03g2766 821 MobiDBLite consensus disorder prediction 223 264 - -
Sed03g2766 821 SMART serkin_6 501 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2766 821 Pfam Universal stress protein family 15 144 IPR006016 -
Sed03g2766 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 148 - -
Sed03g2766 821 Pfam Protein kinase domain 504 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2766 821 Gene3D HUPs 13 156 IPR014729 -
Sed03g2766 821 CDD STK_N 14 171 - -
Sed03g2766 821 MobiDBLite consensus disorder prediction 780 821 - -
Sed03g2766 821 PANTHER OS02G0152300 PROTEIN 15 801 IPR051348 -
Sed03g2766 821 Coils Coil 430 473 - -
Sed03g2766 821 MobiDBLite consensus disorder prediction 784 815 - -
Sed03g2766 821 MobiDBLite consensus disorder prediction 52 83 - -
Sed03g2766 821 Gene3D Transferase(Phosphotransferase) domain 1 574 777 - -
Sed03g2766 821 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2766 Sed-Chr3:44119791 Sed13g2108 Sed-Chr13:25785078 9.20E-213 dispersed
Sed03g2766 Sed-Chr3:44119791 Sed05g1633 Sed-Chr5:30232090 1.50E-218 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78941 PF00069 Pkinase 1.30E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2766 - - - 0.0