Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2774 ATGAAGACGCCGGCGAACGGCGGCGCCGCCTCCTCCGTCGCCGCCGGCCCTAATTCCTGTGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCGCTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTACTTTCCACAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAATCCCAAATTACCCAAATCTTCCTTCCAAGTTACTCTGTTTGCTTCATAATGTAACATTACATGCTGACCCTGAAACAGATGAAGTATATGCTCAAATGACATTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAGCCAGAGTTCTTCTGCAAAACATTGACTGCAAGTGACACAAGCACTCATGGTGGGTTCTCCGTACCACGTCGTGCTGCAGAGAAGATCTTCCCCACTCTCGACTTTTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATACTGTATGGACGTTTCGTCACATATTTCGAGGACAACCGAAACGTCATTTGCTAACAACCGGTTGGAGCTTATTTGTTAATGGAAAGAGACTACTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAGCAGCTTCTATTGGGCATTAGGCGAGCTAACAGGCAACCTACAAACTTACCATCATCTGTGTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACCATCTTTTACAACCCGAGGGCAAGTCCCTCAGAATTTGTCATTCCTTTGGCCAAATACTACAAGGCAGTGTCTGCAAACCAGATATCTCTTGGTATGCGCTTCCGAATGATGTTCGAGACTGAAGAGTCTGGAACAAGAAGGTATATGGGCACTATCACAGGTATAAGTGATCTTGATTCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTGCAGGTCGGCTGGGATGAGTCGACTGGAGGAGAAAGGCGAAACCGAGTCTCGGTATGGGAGATTGAACCTGTTATTGCTCCATTTTTCATTTGTCCTCCTCCTTTTCTGAGATCAAAACGGCCGAGGCAACCGGGAATGCTAGATGATGATTCCTCAGATTTGGATGGAATATTTAAAAGAACAATGTTTGGCGATGATTTCTCCTTGAAAGACCCACAGGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCATCGCTCTCTAATTCAATGCAGCCGAATTACATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTCGGTGGAGTCGATATTTCTCGCCAACTTGGCATGCCAAATACACAAATTACTCAGCCAAACAACATACCATTCAACGCACAAAGGCTACTTTCTCAAGCTCAACAGTTAGACCAGCTACCTAAGATACCGTCGACTATGAACTCGATGGGTTCGGTTGTGCAGCCACCGCAACAGTTGGATGATATGTCTCAGCAGACACGGCAGAATATGATTAACCAAAATGCGGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCATGCTAATGGGATCCTACAACAGCAACAAACCTCCTTGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAGCAACATCAGCAAATGCTGGGTCAGAATCAACAGCAGAACATGAATCAGCCCTCAATCCCGGATCAGTTCAATCATCAGTTGCAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAAAAGCTTCAGCAGCAACAACAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCGCCCAACTCCCAGAACAGCAGAGACAGTTGGTTGATGCGTCTCAAAGCTTTTCAAGGTCTATGTCGTCTAACCAAATGCCCGACATGCCTCAATCTACCCCACCTGCAGTCCTTCCATCAAATGTGGTACCACAACAGGCAGCAAAGAGCAATAGCCAGACGAATGACCGATTCTCGAATCAGCATTTGCAACCAAAACTTCCACAACTACAACAACCACCTCCATCTGCTGTACTTTCTGATATGTCTAGGCCTATGGGGCTTACTCCAACCCAAACAAACAATCAGCTTTTTGCAGGTAATAGTAGTGTAGTAACAGGAGCAGCAAGGGCGGGGCAATCTGGAATCACCGATGACATACCATCTTGCTCCACGTCACCTTCCACGAATAATTGCCCAAGTTTGGTTCAACCAGTAACGAATGGACGAGTTCATCGAAACACAGGATTGGTTGAGGATGTTGCTCAGTCTGCTGCAACCATCTTCAGTGCAAATACTGTGGATACCATGTCACCAAATGCCAACTTCGTTAATAAAGATTTGCCTCAGAAGACTGCTGTTAAACCTTCACTGAATATTTCTAAGAATCAAAGCCATGGAATTTTCGGACAACAAACTTTTTTAAGTGGTGCTGTTGGGATGACGGATTTCTTGGACACGTCCTCCTCCACAACCTCGGCTTGCCTCTCTCAGAACGATGCTCAGTTGCAACAGAATAACATGATGTCTTTCAACTCGCAGCCAATGTTGTTTAGAGATGGTGCTCAGGATTTGGAAGTACCAACGGATCTTCATAACATTCCATATGAGACAAATGTCGACGAACAATTGGTAGTGCAGTTGAATTCTGATCCTTTGTTAAACAAGGGCATTGGAGGGCTAGAAAGAGATTTCTCCAATAATTTCTCTTCTGGAGGAATGCTCGTCACTTACGACGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCGCAATCATTTGGTATCCCAGACATGACATTTAATCCCATGGATTCGGCAATGAACGATAACGCCTTCTTGAATAGAAGCCAATGGGCCCCTCCGCCTCCATTTCAGTGTAGGCGAACCTTTACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCCATTGATATTACTCGTTACTCGGGTTATGACGAGCTTAAACAAGACCTTGCTCGTAGGTTCGGCATTGAGGGACAGTTGGAGGACAGGCAGAAAATTGGCTGGAAACTTGTTTATGTGGATCACGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTTCGTAGCATCAAGATCCTCTCCCCACAGGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGGGTCCTAGCAAACCAAGCCTGCAGTAGCTCGGATGGCGGAAATGCTTAA 3333 46.02 MKTPANGGAASSVAAGPNSCEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDFSMQPPAQELVAKDLHDTVWTFRHIFRGQPKRHLLTTGWSLFVNGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLPSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQVGWDESTGGERRNRVSVWEIEPVIAPFFICPPPFLRSKRPRQPGMLDDDSSDLDGIFKRTMFGDDFSLKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGMPNTQITQPNNIPFNAQRLLSQAQQLDQLPKIPSTMNSMGSVVQPPQQLDDMSQQTRQNMINQNAVSSQIQAQIMQQPHANGILQQQQTSLQNQQLQRSLPQNLQMQQHQQMLGQNQQQNMNQPSIPDQFNHQLQMSDNQVQMQMLQKLQQQQQSLLAQQSALQPAQLAQLPEQQRQLVDASQSFSRSMSSNQMPDMPQSTPPAVLPSNVVPQQAAKSNSQTNDRFSNQHLQPKLPQLQQPPPSAVLSDMSRPMGLTPTQTNNQLFAGNSSVVTGAARAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRVHRNTGLVEDVAQSAATIFSANTVDTMSPNANFVNKDLPQKTAVKPSLNISKNQSHGIFGQQTFLSGAVGMTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGAQDLEVPTDLHNIPYETNVDEQLVVQLNSDPLLNKGIGGLERDFSNNFSSGGMLVTYDAQKDPQQEISSSIVSQSFGIPDMTFNPMDSAMNDNAFLNRSQWAPPPPFQCRRTFTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLANQACSSSDGGNA 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44251030 44259592 - Sed0023053.1 Sed03g2774 708261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2774 1110 Gene3D - 300 370 - -
Sed03g2774 1110 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677(InterPro)
Sed03g2774 1110 Pfam Auxin response factor 262 345 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g2774 1110 CDD B3_DNA 135 227 IPR003340 GO:0003677(InterPro)
Sed03g2774 1110 FunFam Auxin response factor 300 371 - -
Sed03g2774 1110 SUPERFAMILY CAD & PB1 domains 1011 1077 - -
Sed03g2774 1110 FunFam Auxin response factor 134 238 - -
Sed03g2774 1110 Pfam B3 DNA binding domain 136 238 IPR003340 GO:0003677(InterPro)
Sed03g2774 1110 Gene3D - 134 237 IPR015300 -
Sed03g2774 1110 MobiDBLite consensus disorder prediction 639 672 - -
Sed03g2774 1110 SMART B3_2 136 238 IPR003340 GO:0003677(InterPro)
Sed03g2774 1110 FunFam Auxin response factor 994 1087 - -
Sed03g2774 1110 MobiDBLite consensus disorder prediction 569 595 - -
Sed03g2774 1110 SUPERFAMILY DNA-binding pseudobarrel domain 125 265 IPR015300 -
Sed03g2774 1110 Gene3D - 994 1087 - -
Sed03g2774 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 1089 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed03g2774 1110 Pfam AUX/IAA family 998 1083 IPR033389 -
Sed03g2774 1110 ProSiteProfiles PB1 domain profile. 998 1083 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2774 Sed-Chr3:44251030 Sed11g0597 Sed-Chr11:7025012 0.00E+00 dispersed
Sed11g0596 Sed-Chr11:7021279 Sed03g2774 Sed-Chr3:44251030 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37956 PF02309 AUX_IAA 2.50E-07 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2774 - - - 0.0