Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2785 | ATGAGTTCGTTGAAGGGGTCTCCGTACGGAAGGCGGAGCGACGTCGAGTCCGGCAGCAGCAACTCCGGCGAACCGGAGGAGGAGGAATCATCTTCTAATCCTTTCGAAATTTCAACAACCAAGCATGCGTCTCTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTAGTGTTAAATGCTTCTCGACGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAGAGAAGCTTTAAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGATGCTGGGGATCGTCTAACAGGTCCAGGATCTACGAGAGGAGAAGCTCCAGATGGTGATTTTTCTGTCGGGCAAGATCAATTGGCTGTTCTGGTAAAGGATCGTAATGTTGAAGCTCTTGAGCAATATGGAGGGGTTAAAGGGGTAGCAGATATGTTGCAATCAAATTTAGACAAGGGGATAATTGGTGATGATTTGGATATACTGCAACGAAAAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGATTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCCTCCTTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTGGTAACAGCTGTAAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAATTGGAGGTCATTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATAACTGGACATTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATCGTTCAAAAGCGTGCTAAGGAACCTTTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCATTTGCTGTCTTAGTTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAGAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCTGTTGATGGAGCTATTAAAATTGTGACTATTGCGGTGACCATCGTCGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTGGCATACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACTATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGACTGATCAACCAGAGAAGAAGTTAGAGTCATCTTCCATGTTATACTCACTACTTGTTGAAGGCATTGCTCTGAACTCAAATGGAAGTGTGTATGTGCAGAGTGGTGGAGAGCCAGAGGTTACAGGATCACCTACGGAAAAGGCTGTTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATTAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAACGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTTTAGCATCGTGCACACAGTACATGGATGAGCATGATCACCATGTCCAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGAACTTTTGACCCTGAGAATGTTCCTGATGGAGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAGAGATGCAGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGCTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTTCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGTTCCTCTCCCAATGATAAACTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGGCATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCGGTATACGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACGGTTAATGTTGCAGCGCTCATCATCAATGTGGTGGCAGCAGTGTCCTCTGGTGATGTCCCTCTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGGGCGTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCTGTTGGTAGGAGAGAACCTCTGATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTATCCTCAACTTTCGTGGTCAAAGCTTGCTTCATTTGAACCACTTCAATGTAGACGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAGTTTTCAATGAATTCAATGCTCGAAAACCTGATGAAAAGAACATATTCAAAGGAGTCAATCAAAATTACCTCTTTATCGGGATCGTTGGAATTACTGTTGTTCTCCAGGTGATAATAATCGAGTTTCTCGGAAAGTTCACCTCCACAGTCAGGCTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCATTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGTTCATTATCCGAATGTTCCGTAAACGACAACCCGGGGCAGCATAA | 3222 | 43.11 | MSSLKGSPYGRRSDVESGSSNSGEPEEEESSSNPFEISTTKHASLDRLRRWRQAALVLNASRRFRYTLDLKKEEEKREALRKIRAHAQAIRAAYLFKDAGDRLTGPGSTRGEAPDGDFSVGQDQLAVLVKDRNVEALEQYGGVKGVADMLQSNLDKGIIGDDLDILQRKNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYRQSLQFQNLNKEKRNIQLEVIRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGILITGHSLAIDESSMTGESKIVQKRAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLTRYFTGHTRNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYAGGKKTDQPEKKLESSSMLYSLLVEGIALNSNGSVYVQSGGEPEVTGSPTEKAVLNWGIKLGMNFEAIRTESTILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTQYMDEHDHHVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRTFDPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILASDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLILNFRGQSLLHLNHFNVDAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNQNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALIGKFIPVPETPFHVFIIRMFRKRQPGAA | 1073 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 44434066 | 44456957 | - | Sed0019651.2 | Sed03g2785 | 708272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2785 | 1073 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 133 | 1052 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 704 | 714 | - | - | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 307 | 321 | - | - | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 813 | 825 | - | - | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 789 | 808 | - | - | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 497 | - | - | |
Sed03g2785 | 1073 | PRINTS | P-type cation-transporting ATPase superfamily signature | 682 | 693 | - | - | |
Sed03g2785 | 1073 | Pfam | haloacid dehalogenase-like hydrolase | 481 | 803 | - | - | |
Sed03g2785 | 1073 | SUPERFAMILY | Calcium ATPase, transduction domain A | 261 | 356 | IPR008250 | - | |
Sed03g2785 | 1073 | Pfam | Cation transporter/ATPase, N-terminus | 140 | 208 | IPR004014 | - | |
Sed03g2785 | 1073 | CDD | P-type_ATPase_Ca_PMCA-like | 165 | 922 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 43 | 99 | - | - | |
Sed03g2785 | 1073 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 32 | 75 | IPR024750 | GO:0005516(InterPro) | |
Sed03g2785 | 1073 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 140 | 1052 | IPR023298 | - | |
Sed03g2785 | 1073 | Gene3D | - | 43 | 99 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 806 | 1054 | - | - | |
Sed03g2785 | 1073 | Gene3D | - | 493 | 689 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2785 | 1073 | Gene3D | - | 480 | 834 | IPR023214 | - | |
Sed03g2785 | 1073 | Coils | Coil | 70 | 90 | - | - | |
Sed03g2785 | 1073 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 490 | 686 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2785 | 1073 | PRINTS | Sodium/potassium-transporting ATPase signature | 600 | 618 | - | - | |
Sed03g2785 | 1073 | PRINTS | Sodium/potassium-transporting ATPase signature | 226 | 246 | - | - | |
Sed03g2785 | 1073 | PRINTS | Sodium/potassium-transporting ATPase signature | 476 | 497 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 239 | 359 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 683 | 834 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 493 | 689 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase | 191 | 248 | - | - | |
Sed03g2785 | 1073 | SMART | Cation_ATPase_N_a_2 | 139 | 213 | IPR004014 | - | |
Sed03g2785 | 1073 | Gene3D | - | 191 | 1045 | - | - | |
Sed03g2785 | 1073 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Sed03g2785 | 1073 | NCBIfam | HAD-IC family P-type ATPase | 423 | 509 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2785 | 1073 | NCBIfam | HAD-IC family P-type ATPase | 756 | 869 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2785 | 1073 | SFLD | p-type atpase | 465 | 841 | IPR044492 | - | |
Sed03g2785 | 1073 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 485 | 491 | IPR018303 | - | |
Sed03g2785 | 1073 | Gene3D | - | 165 | 359 | - | - | |
Sed03g2785 | 1073 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 337 | 507 | - | - | |
Sed03g2785 | 1073 | PANTHER | CATION TRANSPORTING ATPASE | 92 | 1052 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Sed03g2785 | 1073 | Pfam | E1-E2 ATPase | 261 | 461 | - | - | |
Sed03g2785 | 1073 | Pfam | Cation transporting ATPase, C-terminus | 874 | 1050 | IPR006068 | - | |
Sed03g2785 | 1073 | SFLD | Haloacid Dehalogenase | 465 | 841 | - | - | |
Sed03g2785 | 1073 | SUPERFAMILY | HAD-like | 481 | 894 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2785 | Sed-Chr3:44434066 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed03g2784 | Sed-Chr3:44434066 | Sed03g2785 | Sed-Chr3:44434066 | 0.00E+00 | tandem | |
Sed03g2785 | Sed-Chr3:44434066 | Sed03g2786 | Sed-Chr3:44434066 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2785 | K01537 | - | csv:101211703 | 1861.66 |