Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2785 ATGAGTTCGTTGAAGGGGTCTCCGTACGGAAGGCGGAGCGACGTCGAGTCCGGCAGCAGCAACTCCGGCGAACCGGAGGAGGAGGAATCATCTTCTAATCCTTTCGAAATTTCAACAACCAAGCATGCGTCTCTTGACAGACTCCGCCGCTGGAGACAAGCTGCGCTAGTGTTAAATGCTTCTCGACGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAAAAGAGAGAAGCTTTAAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGATGCTGGGGATCGTCTAACAGGTCCAGGATCTACGAGAGGAGAAGCTCCAGATGGTGATTTTTCTGTCGGGCAAGATCAATTGGCTGTTCTGGTAAAGGATCGTAATGTTGAAGCTCTTGAGCAATATGGAGGGGTTAAAGGGGTAGCAGATATGTTGCAATCAAATTTAGACAAGGGGATAATTGGTGATGATTTGGATATACTGCAACGAAAAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGATTTCTCTGGGAAGCTTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCTGTTGCCTCCTTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTGGTAACAGCTGTAAGTGACTATCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAATTGGAGGTCATTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATAACTGGACATTCACTTGCTATTGATGAATCAAGCATGACTGGAGAGAGCAAGATCGTTCAAAAGCGTGCTAAGGAACCTTTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCATTTGCTGTCTTAGTTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAGAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCTGTTGATGGAGCTATTAAAATTGTGACTATTGCGGTGACCATCGTCGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTGGCATACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACTATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGACTGATCAACCAGAGAAGAAGTTAGAGTCATCTTCCATGTTATACTCACTACTTGTTGAAGGCATTGCTCTGAACTCAAATGGAAGTGTGTATGTGCAGAGTGGTGGAGAGCCAGAGGTTACAGGATCACCTACGGAAAAGGCTGTTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATTAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAACGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTTTAGCATCGTGCACACAGTACATGGATGAGCATGATCACCATGTCCAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGAACTTTTGACCCTGAGAATGTTCCTGATGGAGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAGAGATGCAGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGCTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTTCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGTTCCTCTCCCAATGATAAACTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGGCATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCGGTATACGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACGGTTAATGTTGCAGCGCTCATCATCAATGTGGTGGCAGCAGTGTCCTCTGGTGATGTCCCTCTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGGGCGTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCTGTTGGTAGGAGAGAACCTCTGATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTATCCTCAACTTTCGTGGTCAAAGCTTGCTTCATTTGAACCACTTCAATGTAGACGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAGTTTTCAATGAATTCAATGCTCGAAAACCTGATGAAAAGAACATATTCAAAGGAGTCAATCAAAATTACCTCTTTATCGGGATCGTTGGAATTACTGTTGTTCTCCAGGTGATAATAATCGAGTTTCTCGGAAAGTTCACCTCCACAGTCAGGCTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCATTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGTTCATTATCCGAATGTTCCGTAAACGACAACCCGGGGCAGCATAA 3222 43.11 MSSLKGSPYGRRSDVESGSSNSGEPEEEESSSNPFEISTTKHASLDRLRRWRQAALVLNASRRFRYTLDLKKEEEKREALRKIRAHAQAIRAAYLFKDAGDRLTGPGSTRGEAPDGDFSVGQDQLAVLVKDRNVEALEQYGGVKGVADMLQSNLDKGIIGDDLDILQRKNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAVSDYRQSLQFQNLNKEKRNIQLEVIRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGILITGHSLAIDESSMTGESKIVQKRAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLTRYFTGHTRNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYAGGKKTDQPEKKLESSSMLYSLLVEGIALNSNGSVYVQSGGEPEVTGSPTEKAVLNWGIKLGMNFEAIRTESTILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTQYMDEHDHHVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRTFDPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILASDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLILNFRGQSLLHLNHFNVDAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNQNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALIGKFIPVPETPFHVFIIRMFRKRQPGAA 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44434066 44456957 - Sed0019651.2 Sed03g2785 708272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2785 1073 NCBIfam calcium-translocating P-type ATPase, PMCA-type 133 1052 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 704 714 - -
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 813 825 - -
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 789 808 - -
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Sed03g2785 1073 PRINTS P-type cation-transporting ATPase superfamily signature 682 693 - -
Sed03g2785 1073 Pfam haloacid dehalogenase-like hydrolase 481 803 - -
Sed03g2785 1073 SUPERFAMILY Calcium ATPase, transduction domain A 261 356 IPR008250 -
Sed03g2785 1073 Pfam Cation transporter/ATPase, N-terminus 140 208 IPR004014 -
Sed03g2785 1073 CDD P-type_ATPase_Ca_PMCA-like 165 922 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 43 99 - -
Sed03g2785 1073 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 75 IPR024750 GO:0005516(InterPro)
Sed03g2785 1073 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 1052 IPR023298 -
Sed03g2785 1073 Gene3D - 43 99 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 806 1054 - -
Sed03g2785 1073 Gene3D - 493 689 IPR023299 GO:0000166(InterPro)
Sed03g2785 1073 Gene3D - 480 834 IPR023214 -
Sed03g2785 1073 Coils Coil 70 90 - -
Sed03g2785 1073 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 490 686 IPR023299 GO:0000166(InterPro)
Sed03g2785 1073 PRINTS Sodium/potassium-transporting ATPase signature 600 618 - -
Sed03g2785 1073 PRINTS Sodium/potassium-transporting ATPase signature 226 246 - -
Sed03g2785 1073 PRINTS Sodium/potassium-transporting ATPase signature 476 497 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 239 359 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 683 834 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 493 689 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 191 248 - -
Sed03g2785 1073 SMART Cation_ATPase_N_a_2 139 213 IPR004014 -
Sed03g2785 1073 Gene3D - 191 1045 - -
Sed03g2785 1073 MobiDBLite consensus disorder prediction 1 37 - -
Sed03g2785 1073 NCBIfam HAD-IC family P-type ATPase 423 509 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2785 1073 NCBIfam HAD-IC family P-type ATPase 756 869 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2785 1073 SFLD p-type atpase 465 841 IPR044492 -
Sed03g2785 1073 ProSitePatterns E1-E2 ATPases phosphorylation site. 485 491 IPR018303 -
Sed03g2785 1073 Gene3D - 165 359 - -
Sed03g2785 1073 FunFam Calcium-transporting ATPase 9 plasma membrane-type 337 507 - -
Sed03g2785 1073 PANTHER CATION TRANSPORTING ATPASE 92 1052 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed03g2785 1073 Pfam E1-E2 ATPase 261 461 - -
Sed03g2785 1073 Pfam Cation transporting ATPase, C-terminus 874 1050 IPR006068 -
Sed03g2785 1073 SFLD Haloacid Dehalogenase 465 841 - -
Sed03g2785 1073 SUPERFAMILY HAD-like 481 894 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2785 Sed-Chr3:44434066 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed03g2784 Sed-Chr3:44434066 Sed03g2785 Sed-Chr3:44434066 0.00E+00 tandem
Sed03g2785 Sed-Chr3:44434066 Sed03g2786 Sed-Chr3:44434066 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2785 K01537 - csv:101211703 1861.66