Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2786 ATGACTGGAGAGAGCAAGATCGTTCAAAAGCGTGCTAAGGAACCTTTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCATTTGCTGTCTTAGTTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAGAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCTGTTGATGGAGCTATTAAAATTGTGACTATTGCGGTGACCATCGTCGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTGGCATACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACTATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGACTGATCAACCAGAGAAGAAGTTAGAGTCATCTTCCATGTTATACTCACTACTTGTTGAAGGCATTGCTCTGAACTCAAATGGAAGTGTGTATGTGCAGAGTGGTGGAGAGCCAGAGGTTACAGGATCACCTACGGAAAAGGCTGTTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATTAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAACGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTTTAGCATCGTGCACACAGTACATGGATGAGCATGATCACCATGTCCAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGAACTTTTGACCCTGAGAATGTTCCTGATGGAGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAGAGATGCAGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGCTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTTCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGTTCCTCTCCCAATGATAAACTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGGCATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCGGTATACGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACGGTTAATGTTGCAGCGCTCATCATCAATGTGGTGGCAGCAGTGTCCTCTGGTGATGTCCCTCTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGGGCGTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCTGTTGGTAGGAGAGAACCTCTGATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTATCCTCAACTTTCGTGGTCAAAGCTTGCTTCATTTGAACCACTTCAATGTAGACGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAGTTTTCAATGAATTCAATGCTCGAAAACCTGATGAAAAGAACATATTCAAAGGAGTCAATCAAAATTACCTCTTTATCGGGATCGTTGGAATTACTGTTGTTCTCCAGGTGATAATAATCGAGTTTCTCGGAAAGTTCACCTCCACAGTCAGGCTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCATTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGTTCATTATCCGAATGTTCCGTAAACGACAACCCGGGGCAGCATAA 2292 42.98 MTGESKIVQKRAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLTRYFTGHTRNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYAGGKKTDQPEKKLESSSMLYSLLVEGIALNSNGSVYVQSGGEPEVTGSPTEKAVLNWGIKLGMNFEAIRTESTILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTQYMDEHDHHVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRTFDPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILASDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLILNFRGQSLLHLNHFNVDAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNQNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALIGKFIPVPETPFHVFIIRMFRKRQPGAA 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44434066 44446595 - Sed0019651.3 Sed03g2786 708273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2786 763 FunFam Calcium-transporting ATPase 373 524 - -
Sed03g2786 763 SUPERFAMILY HAD-like 171 584 IPR036412 -
Sed03g2786 763 SFLD Haloacid Dehalogenase 155 531 - -
Sed03g2786 763 Gene3D - 15 187 - -
Sed03g2786 763 Gene3D - 496 744 - -
Sed03g2786 763 Pfam E1-E2 ATPase 2 151 - -
Sed03g2786 763 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 742 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed03g2786 763 SUPERFAMILY Calcium ATPase, transduction domain A 1 46 IPR008250 -
Sed03g2786 763 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 180 376 IPR023299 GO:0000166(InterPro)
Sed03g2786 763 PRINTS P-type cation-transporting ATPase superfamily signature 479 498 - -
Sed03g2786 763 PRINTS P-type cation-transporting ATPase superfamily signature 372 383 - -
Sed03g2786 763 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Sed03g2786 763 PRINTS P-type cation-transporting ATPase superfamily signature 394 404 - -
Sed03g2786 763 PRINTS P-type cation-transporting ATPase superfamily signature 503 515 - -
Sed03g2786 763 PANTHER CATION TRANSPORTING ATPASE 1 742 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed03g2786 763 ProSitePatterns E1-E2 ATPases phosphorylation site. 175 181 IPR018303 -
Sed03g2786 763 Gene3D - 380 495 IPR023214 -
Sed03g2786 763 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 742 IPR023298 -
Sed03g2786 763 Pfam Cation transporting ATPase, C-terminus 564 740 IPR006068 -
Sed03g2786 763 NCBIfam HAD-IC family P-type ATPase 446 559 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2786 763 NCBIfam HAD-IC family P-type ATPase 113 199 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2786 763 Pfam haloacid dehalogenase-like hydrolase 171 493 - -
Sed03g2786 763 Gene3D - 188 379 IPR023299 GO:0000166(InterPro)
Sed03g2786 763 FunFam Calcium-transporting ATPase 183 379 - -
Sed03g2786 763 FunFam Calcium-transporting ATPase 496 744 - -
Sed03g2786 763 FunFam Calcium-transporting ATPase 9 plasma membrane-type 27 197 - -
Sed03g2786 763 SFLD p-type atpase 155 531 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2784 Sed-Chr3:44434066 Sed03g2786 Sed-Chr3:44434066 0.00E+00 dispersed
Sed03g2786 Sed-Chr3:44434066 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed03g2785 Sed-Chr3:44434066 Sed03g2786 Sed-Chr3:44434066 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2786 K01537 - csv:101211703 1357.43