Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2786 | ATGACTGGAGAGAGCAAGATCGTTCAAAAGCGTGCTAAGGAACCTTTCCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCATTTGCTGTCTTAGTTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAGAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCTGTTGATGGAGCTATTAAAATTGTGACTATTGCGGTGACCATCGTCGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACCTTAACTCTGGCATACTCAATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACTATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGCTGGTGGGAAGAAGACTGATCAACCAGAGAAGAAGTTAGAGTCATCTTCCATGTTATACTCACTACTTGTTGAAGGCATTGCTCTGAACTCAAATGGAAGTGTGTATGTGCAGAGTGGTGGAGAGCCAGAGGTTACAGGATCACCTACGGAAAAGGCTGTTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTGAAGCAATTAGAACAGAATCTACAATTCTTCATGTTTTCCCCTTCAGCTCAGATAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAACGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTTTAGCATCGTGCACACAGTACATGGATGAGCATGATCACCATGTCCAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGAACTTTTGACCCTGAGAATGTTCCTGATGGAGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAGAGATGCAGTACGACTTTGTCAAAAAGCTGGTGTTAAGGTACGCATGGTCACTGGTGATAATGTCCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGCTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGCATTTCGTGCCCTATCTGATGCCCAAAGAGAAGAAGTTGCTGAGAAAATATCAGTGATGGGCCGTTCCTCTCCCAATGATAAACTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGGCATGTAGTTGCTGTTACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGGACAGAAGTTGCCAAAGAAAGTTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCGGTATACGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACGGTTAATGTTGCAGCGCTCATCATCAATGTGGTGGCAGCAGTGTCCTCTGGTGATGTCCCTCTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGGGCGTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCTGTTGGTAGGAGAGAACCTCTGATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCACTGTGTTGCTTATCCTCAACTTTCGTGGTCAAAGCTTGCTTCATTTGAACCACTTCAATGTAGACGCTATCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGCCAAGTTTTCAATGAATTCAATGCTCGAAAACCTGATGAAAAGAACATATTCAAAGGAGTCAATCAAAATTACCTCTTTATCGGGATCGTTGGAATTACTGTTGTTCTCCAGGTGATAATAATCGAGTTTCTCGGAAAGTTCACCTCCACAGTCAGGCTTAATTGGAAGTATTGGATTATTTCCATAATCATTGGCGTTATCAGTTGGCCTCTAGCTCTCATTGGGAAATTCATACCTGTTCCTGAAACCCCCTTCCATGTGTTCATTATCCGAATGTTCCGTAAACGACAACCCGGGGCAGCATAA | 2292 | 42.98 | MTGESKIVQKRAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLTRYFTGHTRNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYAGGKKTDQPEKKLESSSMLYSLLVEGIALNSNGSVYVQSGGEPEVTGSPTEKAVLNWGIKLGMNFEAIRTESTILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTQYMDEHDHHVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRTFDPENVPDGEEQLSKWALPEDDLVLLAIVGLKDPCRPGVRDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILASDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVTVLLILNFRGQSLLHLNHFNVDAIKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVNQNYLFIGIVGITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALIGKFIPVPETPFHVFIIRMFRKRQPGAA | 763 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 44434066 | 44446595 | - | Sed0019651.3 | Sed03g2786 | 708273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2786 | 763 | FunFam | Calcium-transporting ATPase | 373 | 524 | - | - | |
Sed03g2786 | 763 | SUPERFAMILY | HAD-like | 171 | 584 | IPR036412 | - | |
Sed03g2786 | 763 | SFLD | Haloacid Dehalogenase | 155 | 531 | - | - | |
Sed03g2786 | 763 | Gene3D | - | 15 | 187 | - | - | |
Sed03g2786 | 763 | Gene3D | - | 496 | 744 | - | - | |
Sed03g2786 | 763 | Pfam | E1-E2 ATPase | 2 | 151 | - | - | |
Sed03g2786 | 763 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 1 | 742 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
Sed03g2786 | 763 | SUPERFAMILY | Calcium ATPase, transduction domain A | 1 | 46 | IPR008250 | - | |
Sed03g2786 | 763 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 180 | 376 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2786 | 763 | PRINTS | P-type cation-transporting ATPase superfamily signature | 479 | 498 | - | - | |
Sed03g2786 | 763 | PRINTS | P-type cation-transporting ATPase superfamily signature | 372 | 383 | - | - | |
Sed03g2786 | 763 | PRINTS | P-type cation-transporting ATPase superfamily signature | 173 | 187 | - | - | |
Sed03g2786 | 763 | PRINTS | P-type cation-transporting ATPase superfamily signature | 394 | 404 | - | - | |
Sed03g2786 | 763 | PRINTS | P-type cation-transporting ATPase superfamily signature | 503 | 515 | - | - | |
Sed03g2786 | 763 | PANTHER | CATION TRANSPORTING ATPASE | 1 | 742 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Sed03g2786 | 763 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 175 | 181 | IPR018303 | - | |
Sed03g2786 | 763 | Gene3D | - | 380 | 495 | IPR023214 | - | |
Sed03g2786 | 763 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 49 | 742 | IPR023298 | - | |
Sed03g2786 | 763 | Pfam | Cation transporting ATPase, C-terminus | 564 | 740 | IPR006068 | - | |
Sed03g2786 | 763 | NCBIfam | HAD-IC family P-type ATPase | 446 | 559 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2786 | 763 | NCBIfam | HAD-IC family P-type ATPase | 113 | 199 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2786 | 763 | Pfam | haloacid dehalogenase-like hydrolase | 171 | 493 | - | - | |
Sed03g2786 | 763 | Gene3D | - | 188 | 379 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2786 | 763 | FunFam | Calcium-transporting ATPase | 183 | 379 | - | - | |
Sed03g2786 | 763 | FunFam | Calcium-transporting ATPase | 496 | 744 | - | - | |
Sed03g2786 | 763 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 27 | 197 | - | - | |
Sed03g2786 | 763 | SFLD | p-type atpase | 155 | 531 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2784 | Sed-Chr3:44434066 | Sed03g2786 | Sed-Chr3:44434066 | 0.00E+00 | dispersed | |
Sed03g2786 | Sed-Chr3:44434066 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
Sed03g2785 | Sed-Chr3:44434066 | Sed03g2786 | Sed-Chr3:44434066 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2786 | K01537 | - | csv:101211703 | 1357.43 |