Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2828 ATGGCTGCTGATTCTTCCTTTGATGGTGCTATATCCGATTCACCCAGATGTAGTAAATTGACTATGCAAGAGAAGAGAGAACTTGTTTATGAGATTTCAAAGAAACGTAGTGCATGTGACACACTGCAATCATGGAGCCGTCAAGACATTCTACAAGTCTTGTGTGCAGAGATGGGTAAAGAAAGAAAATATACTGGCTTGACAAAGCAGAAGATAATCGAGCATCTTTTGAGACTCGTATCCGAGAAGAAGCCATCAGTGCCCGAGGTTGTGCAAAACCTTGAGCAAGAGTCTCCTGTTGCTGGCCATAAAAATGCCAAAAGGCAGAGGAAATCTGATCAGCCAGTTCAGGTTTCTGTTCCTACAAGTGACTTTCCGACCAGCAGTTCGCATAACGATCCTGGTCATACGAAATGCTGCAAGAACTTGGCTTGCCGCGCGACTTTAAATCCAAAAGATGCGTTTTGTAAAAGGTGTTCATGCTGCATTTGTCGTCAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCTGAGCCTCCATTTCAAGGTGATTCGTGCAACATGTCGTGCCATCTCGAGTGTGCCTTTAAAGATAAAAGATCAGGAATTTCAGAAGCTGGACAAAGCCGGGAAATTGATGGGAGCTTCTATTGTGTGTCTTGTGGGAAGTTAAATGATTTACTTGGGTGCTGCAGAAAACAACTAGTTCACGCGAAAGATACGAGAAGGGTCGACGTACTATGTTATCGTGTCTTTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGAAGAAGCTGTGAGAAAGCTTGAAGCTGAAGTGGGGCCAATAGCTGGTGCACCAGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTCTTCGGGACCCGAAGTTCAAAAACTATGTGCTTCTGCTATTGAGTTACTGGACTCAATGCTCTCCAGCAAATCGTTGCATGTTTCGCCTAATCCTGACATAAAAGATGCAAATTTTGTTCCTGAAAACATGGTTAGAGTCGAAGATGTTCGGTCGACATCCCTCACTTTGGTTTTGAGTTGTGAATGTGGGTCTCTTGAGAACCAGGTCGGTTTCACTATATGGTGTCGTAAGACAGATGATGCAGATTATCCAATCGAGCCGATATGTATTCTACGACAACCGAAGGCAAGGTTTGATGTGATGGCACTGTCGGCTGCTACTGAATATCATTTCAAGATCTTGATGTTAGAGGGGACTGCAGAATTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTAGAAGAGAATCCAGACTGCTTAGAAATTGAGAGAAGCCAAAGCCATGCAACTAACTGCAGTGACCTTTCTAATCCTTCCTCGGTTGAAGACGAAACTACCGACATTCTTCCTTATGGCGATCAAACCGATAACCTTGGGAAAAACTCCACTGCTTATTCGAAGGGAACTGAAATGCTTTCCTCTGCTAATTTAGCAAACGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGTACAGTTCCTGTGCTGGATGAGGCAAATGCTGCAGGAATGGTTGGTTTGACTCCCGACTCCATTGGATCGAAGCTTGAAAACAAGCACGGACCACCTGCCCCGAAACTTAACACCGATAATCTAATAAGTGCCCTTGTTCGGTCTGGAATGCAGCGGGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTGAAGGATAGTATTGGAAGGGCTGAGAGACTGAAAACCAGCTGCATTGACCTCGACAATAGGACTCGAAAAGGAGGGGAACCTCAAGATGGTGGCACGTCGAAAATGCGAACTGGGGATAAACAGGACGACAAGTGTGCTGAAAAGAGCGTTTCAGATCAGGACTTCGAGCACTATGTGAAGGTAATTCGATGGTTAGAATGCGAGGGACATATCGAAAAAAATTTCAGGCAGAAGTTCTTAACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTCGATACTTTCTTGGAAAGCATTTCGTGCAAAAAACCGACGACTACACCTCCCGGGTTCTGCATGAAGCTGTGGCATTGA 2205 44.4 MAADSSFDGAISDSPRCSKLTMQEKRELVYEISKKRSACDTLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSEKKPSVPEVVQNLEQESPVAGHKNAKRQRKSDQPVQVSVPTSDFPTSSSHNDPGHTKCCKNLACRATLNPKDAFCKRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECAFKDKRSGISEAGQSREIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDVLCYRVFLSQKLLHGTEKYKVLYQIVEEAVRKLEAEVGPIAGAPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMLSSKSLHVSPNPDIKDANFVPENMVRVEDVRSTSLTLVLSCECGSLENQVGFTIWCRKTDDADYPIEPICILRQPKARFDVMALSAATEYHFKILMLEGTAELRKFEVQFSTIREVEENPDCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDQTDNLGKNSTAYSKGTEMLSSANLANDAFNLSDNGEEGTPAGTVPVLDEANAAGMVGLTPDSIGSKLENKHGPPAPKLNTDNLISALVRSGMQREPFVGCSEDGLPITPCKLEVLKDSIGRAERLKTSCIDLDNRTRKGGEPQDGGTSKMRTGDKQDDKCAEKSVSDQDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFLESISCKKPTTTPPGFCMKLWH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45327189 45331737 - Sed0026985.1 Sed03g2828 708315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2828 734 Coils Coil 265 285 - -
Sed03g2828 734 CDD PHD_VIN3_plant 160 225 - -
Sed03g2828 734 MobiDBLite consensus disorder prediction 613 640 - -
Sed03g2828 734 MobiDBLite consensus disorder prediction 112 135 - -
Sed03g2828 734 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Sed03g2828 734 MobiDBLite consensus disorder prediction 94 135 - -
Sed03g2828 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 14 734 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2828 Sed-Chr3:45327189 Sed08g0492 Sed-Chr8:3203026 7.60E-227 dispersed
Sed03g2828 Sed-Chr3:45327189 Sed03g2829 Sed-Chr3:45327189 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2828 - - - 0.0