Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2829 ATGGCTGCTGATTCTTCCTTTGATGGTGCTATATCCGATTCACCCAGATGTAGTAAATTGACTATGCAAGAGAAGAGAGAACTTGTTTATGAGATTTCAAAGAAACGTAGTGCATGTGACACACTGCAATCATGGAGCCGTCAAGACATTCTACAAGTCTTGTGTGCAGAGATGGGTAAAGAAAGAAAATATACTGGCTTGACAAAGCAGAAGATAATCGAGCATCTTTTGAGACTCGTATCCGAGAAGAAGCCATCAGTGCCCGAGGTTGTGCAAAACCTTGAGCAAGAGTCTCCTGTTGCTGGCCATAAAAATGCCAAAAGGCAGAGGAAATCTGATCAGCCAGTTCAGGTTTCTGTTCCTACAAGTGACTTTCCGACCAGCAGTTCGCATAACGATCCTGGTCATACGAAATGCTGCAAGAACTTGGCTTGCCGCGCGACTTTAAATCCAAAAGATGCGTTTTGTAAAAGGTGTTCATGCTGCATTTGTCGTCAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCTGAGCCTCCATTTCAAGGTGATTCGTGCAACATGTCGTGCCATCTCGAGTGTGCCTTTAAAGATAAAAGATCAGGAATTTCAGAAGCTGGACAAAGCCGGGAAATTGATGGGAGCTTCTATTGTGTGTCTTGTGGGAAGTTAAATGATTTACTTGGGTGCTGCAGAAAACAACTAGTTCACGCGAAAGATACGAGAAGGGTCGACGTACTATGTTATCGTGTCTTTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGAAGAAGCTGTGAGAAAGCTTGAAGCTGAAGTGGGGCCAATAGCTGGTGCACCAGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTCTTCGGGACCCGAAGTTCAAAAACTATGTGCTTCTGCTATTGAGTTACTGGACTCAATGCTCTCCAGCAAATCGTTGCATGTTTCGCCTAATCCTGACATAAAAGATGCAAATTTTGTTCCTGAAAACATGGTTAGAGTCGAAGATGTTCGGTCGACATCCCTCACTTTGGTTTTGAGTTGTGAATGTGGGTCTCTTGAGAACCAGGTCGGTTTCACTATATGGTGTCGTAAGACAGATGATGCAGATTATCCAATCGAGCCGATATGTATTCTACGACAACCGAAGGCAAGGTTTGATGTGATGGCACTGTCGGCTGCTACTGAATATCATTTCAAGATCTTGATGTTAGAGGGGACTGCAGAATTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTAGAAGAGAATCCAGACTGCTTAGAAATTGAGAGAAGCCAAAGCCATGCAACTAACTGCAGTGACCTTTCTAATCCTTCCTCGGTTGAAGACGAAACTACCGACATTCTTCCTTATGGCGATCAAACCGATAACCTTGGGAAAAACTCCACTGCTTATTCGAAGGGAACTGAAATGCTTTCCTCTGCTAATTTAGCAAACGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGTACAGTTCCTGTGCTGGATGAGGCAAATGCTGCAGGAATGGTTGGTTTGACTCCCGACTCCATTGGATCGAAGCTTGAAAACAAGCACGGACCACCTGCCCCGAAACTTAACACCGATAATCTAATAAGTGCCCTTGTTCGGTCTGGAATGCAGCGGGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTGAAGGATAGTATTGGAAGGGCTGAGAGACTGAAAACCAGCTGCATTGACCTCGACAATAGGACTCGAAAAGGAGGGGAACCTCAAGATGGTGGCACGTCGAAAATGCGAACTGGGGATAAACAGGACGACAAGTGTGCTGAAAAGAGCGTTTCAGATCAGGACTTCGAGCACTATGTGAAGGTAATTCGATGGTTAGAATGCGAGGGACATATCGAAAAAAATTTCAGGCAGAAGTTCTTAACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTCGATACTTTCTTGGAAAGCATTTCGTGCAAAAAACCGACGACTACACCTCCCGGGTTCTGCATGAAGCTGTGGCATTGA 2205 44.4 MAADSSFDGAISDSPRCSKLTMQEKRELVYEISKKRSACDTLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSEKKPSVPEVVQNLEQESPVAGHKNAKRQRKSDQPVQVSVPTSDFPTSSSHNDPGHTKCCKNLACRATLNPKDAFCKRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECAFKDKRSGISEAGQSREIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDVLCYRVFLSQKLLHGTEKYKVLYQIVEEAVRKLEAEVGPIAGAPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMLSSKSLHVSPNPDIKDANFVPENMVRVEDVRSTSLTLVLSCECGSLENQVGFTIWCRKTDDADYPIEPICILRQPKARFDVMALSAATEYHFKILMLEGTAELRKFEVQFSTIREVEENPDCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDQTDNLGKNSTAYSKGTEMLSSANLANDAFNLSDNGEEGTPAGTVPVLDEANAAGMVGLTPDSIGSKLENKHGPPAPKLNTDNLISALVRSGMQREPFVGCSEDGLPITPCKLEVLKDSIGRAERLKTSCIDLDNRTRKGGEPQDGGTSKMRTGDKQDDKCAEKSVSDQDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFLESISCKKPTTTPPGFCMKLWH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45327189 45331737 - Sed0026985.2 Sed03g2829 708316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2829 734 Coils Coil 265 285 - -
Sed03g2829 734 CDD PHD_VIN3_plant 160 225 - -
Sed03g2829 734 MobiDBLite consensus disorder prediction 613 640 - -
Sed03g2829 734 MobiDBLite consensus disorder prediction 112 135 - -
Sed03g2829 734 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Sed03g2829 734 MobiDBLite consensus disorder prediction 94 135 - -
Sed03g2829 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 14 734 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2829 Sed-Chr3:45327189 Sed08g0492 Sed-Chr8:3203026 7.60E-227 dispersed
Sed03g2828 Sed-Chr3:45327189 Sed03g2829 Sed-Chr3:45327189 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g2828 . 4 471 PHD Gene Family AT4G30200 51.5 4.6e-124 443.0
Sed03g2829 . 4 471 PHD Gene Family AT4G30200 51.5 4.6e-124 443.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64