Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2862 ATGGATAGTCCTACTATGACGCTCAGCTCAGCCCCTAATTCGTCAACGGTCTCGAATTCGGGCTCGATGGATGAAACCCCTCGGGTTAAATTCCTGTGCAGTTTCTTGGGAAATATAATGCCTCGCCCCCAAGATGGTAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTGCAAGGGATATTACATATGAGGAGTTGATGAGTAAGATGAGGGAGCTCTATGAAGGGGCTGCGGTATTGAAGTACCAGCAACCCGATGAGGATCTTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATCAACATGATGGAAGAGTACGATAAGGTGGGTACGGGCGATGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCTGAACAGGATGGTTCTTTTCCCTTCGTGGATGCCGATGAGAGGGATACGGAGAGGCGATATGTTGACGCTCTTAATAATTCAAATGACATGAATGATTTTGGTAGACAACAACCAGATTCCCCTGTAATCAGTGGCATAGATGATTTGCATGGGTCAGAACATTTTTTGAATCCAATTAATATTGAAGGTAGTCTTCTCACTCAGAGGAGTTGTGAGCCCTTATCTCAATATCACCTGCATCAGCTCACAATTCCTCATGCTGGATCTGGGCAACAACAGCAATCTGTAACTCAAAGGTATAGTGAAATGGAACCTCCATGGAGTCCTGCTTTCCTTTCACCCAGGCATCATTGTCCATATGATTCGAGACCAGTGGGAGAATATCCATCTTCTCCATCTGCACGATACCGTATGCCGTTCTCGGAGTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGCAAGGCAGCAAATGACTCACCAGCATATGTATGAACATCAACCACAATATAATGAGAGTGTTGTCTGGCTGCCAAATGGAACAATTAGTGAAAAATCGGGTTTCCCAGGTAATATATTACATGGACACGGTGTTCCTGATGGGAATAGTTCTTGTGAAAACTGTCGGGCAAATTTTCATCGGTATCAAGCACCCATGGAACAAGCTAATATGGTAAATGGACTTCCTCCAGAATACCCTCAGAATAGGGATGCCTTGATTCAAAAAGTAGACTTGAAGTTCCATCATGGTATTTTCCCAAATGAGCAAAATGTTAATGATCATCGATCTGCTTATAATGAGACACCACCCCATGAGAGAGGATGGATTATGCAACATCAGATGAGTGGGCGAGGAGATGACACGAGAGCACATGGTTCTGGGGTTGGACGCTTAAATGATCACTATATTGTGGATGGTTCTAGTTCAAATTTTCCTCCTACACAAAGTAATATTGTTGATGGCTACCATACGTCCATGAATTTTCATGATGAGGTATTTCGTGAACAGGTTGTGCCTAGTGGGCCACATATGTGTGTTCCTCCTCCTGAAGATCGTGGTGTTGGATATATGAATATGCCTTATGGCTATGGAGGAGATCCTCAATATCCTCCTCCAATGGCGCACAGGCATCTGCCTGGAAATGCCTTGTGGCGAAATGTTCAGAATCCATCACATGTTTCTCCTCCTTATGAAGGATCCGTTTCCCTTCCGCTAGGGAATGTTAGTGTAAATCCAGGATATATTAGAGGCATGCAAGAGGGTAGTCCACGGATTCATATCGGTATAGACCACCCAAATCCTTGGCATGACTCCTCACCAAAAATGTTGGGTATTGAGGGAACAACTGGTTCGGAGCATTTACCCACACATGTTTTGAAGACCAACTCCATCACTGTTGCTCATGACAATCAACAATTCTCGAGTTTAGAACATATCCAACCACATCTAGAGAAGATAAACCTTGTTTCTTCACCTTTGCCGAGATCAGAGTCATCTTCAACATTTATTCATGAACAGATGGTTTCACCTTTTCATTCTAGCCAAAATCTACAGCCTAGGGCTGTTAATGAAGCTATGATGATGGAAAAAAAAATTGTGCCTGGAGAAGGAAACGGGCATATTACAACCGATTTGGGGAAAGTTGATGCACACATTGATATTGGTTCTAATCCAGAGCAGAATATCACAGATGTTACGTATTCCAAGGTTGCACCCTCTGAGTTGATAAATTCAGACTGCACGAACGTTCTTGTAGAGAATGGTGATGGCTTGAAACCAGCTGAAGTGACTCTTGAAGAGCCAGAACTTTCTGTCAACCGTCTGAGATTCTTACCTGAGTTGATTGCATCTGTGAAGAGAGCAGCATTAGAAGTATCTGAAGAGGCAATGGTTAAAGAAACCACTTTAGGGAGACCCGATTCAATAGGCAAAAAAGAGACCGCAAACGAGAATGCCCATGAGGAACCTGAGTTGGAAACTGAGAGTGACCATCAAAGCTCCGGAATCGAGCCGACAAAGGCAGAAGCAGAAGCCATATCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGATCTGGGACTTACGGTGCTGTTTTTCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCGGGACGACCCTCAGAAAGAGAACGTCTGATTGGTGATTTTTGGAAAGAAGCTTTGATATTAAGTTCCTTGCATCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGATGGTCCTGATGGGTCCTTAGCAACAGTGACAGAATTCATGGTAAATGGATCATTGAAACAGTTTTTGCGCAAGAAGGATAGGACCATTGATCGTCGAAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTTTGCAAGATCGGTGATTTGGGGTTGTCGAAGGTCAGACAACACACGCTAGTATCGGGAGGGGTTCGTGGAACGTTGCCCTGGATGGCACCGGAGCTTCTTAGCGGAAAAAGTAATATGGTGTCAGAGAAGATTGATGTTTACTCATTTGGGATTGTTATGTGGGAACTGCTCACTGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATTATCGGAGGAATAGTGCACAATTGCTTACGTCCAGAAATACCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCGAGCTGTTGGGACTCAGATCCAACTACGAGACCATCATTTTCAGAAATTTCTCAAAAGCTAAGGACTATGGCAGCTGCAATGAATTTGAAATAG 3294 43.32 MDSPTMTLSSAPNSSTVSNSGSMDETPRVKFLCSFLGNIMPRPQDGKLRYVGGETRIVSVARDITYEELMSKMRELYEGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGTGDGFTRLRIFLFSHPEQDGSFPFVDADERDTERRYVDALNNSNDMNDFGRQQPDSPVISGIDDLHGSEHFLNPINIEGSLLTQRSCEPLSQYHLHQLTIPHAGSGQQQQSVTQRYSEMEPPWSPAFLSPRHHCPYDSRPVGEYPSSPSARYRMPFSELPDKYLERMPEDYARQQMTHQHMYEHQPQYNESVVWLPNGTISEKSGFPGNILHGHGVPDGNSSCENCRANFHRYQAPMEQANMVNGLPPEYPQNRDALIQKVDLKFHHGIFPNEQNVNDHRSAYNETPPHERGWIMQHQMSGRGDDTRAHGSGVGRLNDHYIVDGSSSNFPPTQSNIVDGYHTSMNFHDEVFREQVVPSGPHMCVPPPEDRGVGYMNMPYGYGGDPQYPPPMAHRHLPGNALWRNVQNPSHVSPPYEGSVSLPLGNVSVNPGYIRGMQEGSPRIHIGIDHPNPWHDSSPKMLGIEGTTGSEHLPTHVLKTNSITVAHDNQQFSSLEHIQPHLEKINLVSSPLPRSESSSTFIHEQMVSPFHSSQNLQPRAVNEAMMMEKKIVPGEGNGHITTDLGKVDAHIDIGSNPEQNITDVTYSKVAPSELINSDCTNVLVENGDGLKPAEVTLEEPELSVNRLRFLPELIASVKRAALEVSEEAMVKETTLGRPDSIGKKETANENAHEEPELETESDHQSSGIEPTKAEAEAISRGLQTIKNDDLEEIRELGSGTYGAVFHGKWRGSDVAIKRIKASCFAGRPSERERLIGDFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLRKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVHNCLRPEIPTWCDPEWKALMSSCWDSDPTTRPSFSEISQKLRTMAAAMNLK 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45778972 45788314 - Sed0009526.2 Sed03g2862 708349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2862 1097 Pfam PB1 domain 44 128 IPR000270 GO:0005515(InterPro)
Sed03g2862 1097 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 817 911 - -
Sed03g2862 1097 ProSitePatterns Protein kinases ATP-binding region signature. 830 851 IPR017441 GO:0005524(InterPro)
Sed03g2862 1097 MobiDBLite consensus disorder prediction 1 24 - -
Sed03g2862 1097 SUPERFAMILY CAD & PB1 domains 45 133 - -
Sed03g2862 1097 SUPERFAMILY Protein kinase-like (PK-like) 811 1085 IPR011009 -
Sed03g2862 1097 ProSiteProfiles Protein kinase domain profile. 824 1090 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 PRINTS Tyrosine kinase catalytic domain signature 1014 1036 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 PRINTS Tyrosine kinase catalytic domain signature 1058 1080 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 PRINTS Tyrosine kinase catalytic domain signature 906 919 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 PRINTS Tyrosine kinase catalytic domain signature 943 961 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 MobiDBLite consensus disorder prediction 767 803 - -
Sed03g2862 1097 MobiDBLite consensus disorder prediction 767 808 - -
Sed03g2862 1097 Pfam Protein tyrosine and serine/threonine kinase 826 1087 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 PANTHER SERINE-THREONINE PROTEIN KINASE 12 1091 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed03g2862 1097 Gene3D Transferase(Phosphotransferase) domain 1 911 1096 - -
Sed03g2862 1097 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 130 - -
Sed03g2862 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 949 961 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 Gene3D - 47 130 - -
Sed03g2862 1097 CDD STKc_MAP3K-like 830 1087 - -
Sed03g2862 1097 CDD PB1_UP2 32 128 - -
Sed03g2862 1097 SMART serkin_6 824 1091 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2862 1097 SMART PB1_new 43 128 IPR000270 GO:0005515(InterPro)
Sed03g2862 1097 Gene3D Phosphorylase Kinase; domain 1 809 910 - -
Sed03g2862 1097 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 912 1097 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2862 Sed-Chr3:45778972 Sed12g0406 Sed-Chr12:2437291 4.00E-147 dispersed
Sed03g2861 Sed-Chr3:45778972 Sed03g2862 Sed-Chr3:45778972 0.00E+00 tandem
Sed03g2862 Sed-Chr3:45778972 Sed03g2863 Sed-Chr3:45778972 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78944 PF07714 PK_Tyr_Ser-Thr 8.60E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2862 - - - 0.0