Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2870 ATGGCTTTTCTAGAGGTAAAGCAGAAACTCCTTAGTGAGATTGAATCTTTAGGATTCTCGAGGGCCCGAGCTGTTCGTGCACTTCATAGTACTGGAAATGTTAGCTCTGAAGATGCCATAAATTGGATCATTGATCATGAGAATGATCCTGATATAGATCAAATGCCCCTGGTAGCAGTAGAGATTGATCTTGAATCTCCTGAACCATTTCATATAACGGAGGAAATGAAAAGGAAAGCTAATGAACTAAGGGATCAAATACTGAAAAGAAATGAAAATGAAGAAAAAGAGTTAGAAAGACAAAAGGAGAAGGATAGAATTCGTACTGGTAAAGAACTGCAAGAAGCAAAAAGAATGGCAGAAGAAACTGAAAGGAAACGCTTTATAGATTCTAGGCAAGTTGAGAAACAGGAGGAGAAAAGAGCCAGAGAAAAAGTTTTACAAAAACTTGAACAAGAAAAGATAGAAAGGAGGAATCTTGGAATGCCCTCTGAAAGATCTAGAAGCCTTGCTGCAAAAGCTAGCACAATCAGAGCGGGGGAAAATGATGAACTTAGATCACTGAATTCAGCAACTTCAGTTAGTAAAGCAGTCTCTCTGAGAGAATGTTTAAGGTCTCTTAGGTACCATCAAAAGGATGATTCTGACAAAGTGAGAAATGCCTATCAAACTCTCTACACCTATGTTAGAAATGTAGCAAAAAATCCTGATGAGGAAAGGCTTAGGAAGATTCCACTCAGTAATATTTTGTTCCAGGAAAGAGTTGGGAGCTTGAAAGGAGGGACCGAGTTTCTCGAGCTTTGTGGCTTTCATAAAGCAGGAGACTCTCTATACCTTCCTCGCGATAAAGTTGACCGGGAACTTCTGGTCACTGCTGGATCACTGTTGGAATCTGCATTGACAAATCCTTTTTTTGGTGTTCTTTGA 927 39.48 MAFLEVKQKLLSEIESLGFSRARAVRALHSTGNVSSEDAINWIIDHENDPDIDQMPLVAVEIDLESPEPFHITEEMKRKANELRDQILKRNENEEKELERQKEKDRIRTGKELQEAKRMAEETERKRFIDSRQVEKQEEKRAREKVLQKLEQEKIERRNLGMPSERSRSLAAKASTIRAGENDELRSLNSATSVSKAVSLRECLRSLRYHQKDDSDKVRNAYQTLYTYVRNVAKNPDEERLRKIPLSNILFQERVGSLKGGTEFLELCGFHKAGDSLYLPRDKVDRELLVTAGSLLESALTNPFFGVL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45815493 45832172 - Sed0021794.2 Sed03g2870 708357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2870 308 SMART PGNneu 220 281 - -
Sed03g2870 308 Gene3D - 203 298 - -
Sed03g2870 308 Gene3D - 8 53 - -
Sed03g2870 308 Pfam UBA-like domain 8 54 IPR015940 -
Sed03g2870 308 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Sed03g2870 308 SUPERFAMILY PUG domain-like 207 304 IPR036339 -
Sed03g2870 308 CDD UBA_PUB_plant 5 53 - -
Sed03g2870 308 Pfam PUB domain 216 286 IPR018997 -
Sed03g2870 308 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515(InterPro)
Sed03g2870 308 Coils Coil 73 126 - -
Sed03g2870 308 MobiDBLite consensus disorder prediction 94 126 - -
Sed03g2870 308 PANTHER F13M7.16 PROTEIN 1 308 - -
Sed03g2870 308 Coils Coil 133 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2870 Sed-Chr3:45815493 Sed11g0515 Sed-Chr11:5076586 4.30E-123 dispersed
Sed03g2869 Sed-Chr3:45815493 Sed03g2870 Sed-Chr3:45815493 1.20E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2870 - - - 0.0