Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2870 | ATGGCTTTTCTAGAGGTAAAGCAGAAACTCCTTAGTGAGATTGAATCTTTAGGATTCTCGAGGGCCCGAGCTGTTCGTGCACTTCATAGTACTGGAAATGTTAGCTCTGAAGATGCCATAAATTGGATCATTGATCATGAGAATGATCCTGATATAGATCAAATGCCCCTGGTAGCAGTAGAGATTGATCTTGAATCTCCTGAACCATTTCATATAACGGAGGAAATGAAAAGGAAAGCTAATGAACTAAGGGATCAAATACTGAAAAGAAATGAAAATGAAGAAAAAGAGTTAGAAAGACAAAAGGAGAAGGATAGAATTCGTACTGGTAAAGAACTGCAAGAAGCAAAAAGAATGGCAGAAGAAACTGAAAGGAAACGCTTTATAGATTCTAGGCAAGTTGAGAAACAGGAGGAGAAAAGAGCCAGAGAAAAAGTTTTACAAAAACTTGAACAAGAAAAGATAGAAAGGAGGAATCTTGGAATGCCCTCTGAAAGATCTAGAAGCCTTGCTGCAAAAGCTAGCACAATCAGAGCGGGGGAAAATGATGAACTTAGATCACTGAATTCAGCAACTTCAGTTAGTAAAGCAGTCTCTCTGAGAGAATGTTTAAGGTCTCTTAGGTACCATCAAAAGGATGATTCTGACAAAGTGAGAAATGCCTATCAAACTCTCTACACCTATGTTAGAAATGTAGCAAAAAATCCTGATGAGGAAAGGCTTAGGAAGATTCCACTCAGTAATATTTTGTTCCAGGAAAGAGTTGGGAGCTTGAAAGGAGGGACCGAGTTTCTCGAGCTTTGTGGCTTTCATAAAGCAGGAGACTCTCTATACCTTCCTCGCGATAAAGTTGACCGGGAACTTCTGGTCACTGCTGGATCACTGTTGGAATCTGCATTGACAAATCCTTTTTTTGGTGTTCTTTGA | 927 | 39.48 | MAFLEVKQKLLSEIESLGFSRARAVRALHSTGNVSSEDAINWIIDHENDPDIDQMPLVAVEIDLESPEPFHITEEMKRKANELRDQILKRNENEEKELERQKEKDRIRTGKELQEAKRMAEETERKRFIDSRQVEKQEEKRAREKVLQKLEQEKIERRNLGMPSERSRSLAAKASTIRAGENDELRSLNSATSVSKAVSLRECLRSLRYHQKDDSDKVRNAYQTLYTYVRNVAKNPDEERLRKIPLSNILFQERVGSLKGGTEFLELCGFHKAGDSLYLPRDKVDRELLVTAGSLLESALTNPFFGVL | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 45815493 | 45832172 | - | Sed0021794.2 | Sed03g2870 | 708357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2870 | 308 | SMART | PGNneu | 220 | 281 | - | - | |
Sed03g2870 | 308 | Gene3D | - | 203 | 298 | - | - | |
Sed03g2870 | 308 | Gene3D | - | 8 | 53 | - | - | |
Sed03g2870 | 308 | Pfam | UBA-like domain | 8 | 54 | IPR015940 | - | |
Sed03g2870 | 308 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
Sed03g2870 | 308 | SUPERFAMILY | PUG domain-like | 207 | 304 | IPR036339 | - | |
Sed03g2870 | 308 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
Sed03g2870 | 308 | Pfam | PUB domain | 216 | 286 | IPR018997 | - | |
Sed03g2870 | 308 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515(InterPro) | |
Sed03g2870 | 308 | Coils | Coil | 73 | 126 | - | - | |
Sed03g2870 | 308 | MobiDBLite | consensus disorder prediction | 94 | 126 | - | - | |
Sed03g2870 | 308 | PANTHER | F13M7.16 PROTEIN | 1 | 308 | - | - | |
Sed03g2870 | 308 | Coils | Coil | 133 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2870 | Sed-Chr3:45815493 | Sed11g0515 | Sed-Chr11:5076586 | 4.30E-123 | dispersed | |
Sed03g2869 | Sed-Chr3:45815493 | Sed03g2870 | Sed-Chr3:45815493 | 1.20E-121 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2870 | - | - | - | 0.0 |