Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2878 ATGAGTTTAATTGAAGAATATTTGCCAGCAATGGCGATGTTAGGAATTCAAATGATTTACTCCATTGTGGCCCTCGTTTCAAGGGCTGCCCTCTTGGAGGGCATGAGTCCTAGAGTCTTCATTGTTTATAGACAGGCCATTGCCACTCTCTTCATTTCACCCATTGCTTATTTCTCCAGGTCGAAATCCATGAAGCTATCATTGGATTTGAGGAGCTTTTACCTGATCTTCCTTGCTGCTTTTATTGGTACAACGATGAACCTCAATTTTTTCTTCGAGGGACTTTTACTAGGCAGCTCGTCGTTAGCGACAGCGATGGAGAATCTGATTCCAGCAATAACATTTGCGATAGCGGCAATGGTTGGAATGGAGAGTGTGAAGATAAGAAGCTTGAGGAGCATGGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTTCATGGCCCTTATGAGGGGCCCAAAGCTTCTTAATGCCACACAAGGATTGTCTTTTATTTTTGCTTTGAAAAGTGGAACTGACCAAGCTTGGTTGTTGGGTTGCTTGAGTCTCTTTGCTAGCTGTTGTTGCTGGTCCATTTGGCTCATTTTGCAGGTACCAGCGATTGAAAGCTATCCCGACAAGCTAGGTTTATCAGCATGGACATGTTTCATTTCCTTAATACAATCAATCATATTCACTTTGTCGGTAGAGGAAGCAAATATAGAAATATGGAAAATACATTCAAGAACTGAGCTTATTTGTTACCTCTTTTCGGGAATTTTTGGGTCAGGAGTGGCTTATTTTCTTCAAGCTTGGGGTATTTCAAAAAGGGGCCCTGTATTTTCTGCAATTTTCAACCCTTTTAACACTATTATTACAACTATTTTGGCAGCCATATTTCTTCATGAGGAGATTTACACTGGAAGCTTGTTGGGGAGTGTGGTTGTAATTATTGGATTATATGTTGTTCTTTGGGGAAAAGCCCATGATTATGTGAAAGAAGGCACAGAAAAGTGCAGTGTTGAAAAACAAGAAGAGAATGGTGAATCAGCTTCAATTCAAACAGATAGCTATAGAATTGATTTGGAGGCACCCCTTTTGTCTAAAGAGTGTATAATTCAAAGTGACAACTAA 1122 40.73 MSLIEEYLPAMAMLGIQMIYSIVALVSRAALLEGMSPRVFIVYRQAIATLFISPIAYFSRSKSMKLSLDLRSFYLIFLAAFIGTTMNLNFFFEGLLLGSSSLATAMENLIPAITFAIAAMVGMESVKIRSLRSMAKIGGTVVCVSGAMFMALMRGPKLLNATQGLSFIFALKSGTDQAWLLGCLSLFASCCCWSIWLILQVPAIESYPDKLGLSAWTCFISLIQSIIFTLSVEEANIEIWKIHSRTELICYLFSGIFGSGVAYFLQAWGISKRGPVFSAIFNPFNTIITTILAAIFLHEEIYTGSLLGSVVVIIGLYVVLWGKAHDYVKEGTEKCSVEKQEENGESASIQTDSYRIDLEAPLLSKECIIQSDN 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45956116 45960563 - Sed0008435.1 Sed03g2878 708365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2878 373 PANTHER WAT1-RELATED PROTEIN 11 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g2878 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 324 - -
Sed03g2878 373 Pfam EamA-like transporter family 181 320 IPR000620 GO:0016020(InterPro)
Sed03g2878 373 Pfam EamA-like transporter family 12 134 IPR000620 GO:0016020(InterPro)
Sed03g2878 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2878 Sed-Chr3:45956116 Sed11g0507 Sed-Chr11:4834483 5.80E-138 dispersed
Sed03g2878 Sed-Chr3:45956116 Sed03g2879 Sed-Chr3:45967047 1.20E-188 tandem
Sed04g2265 Sed-Chr4:36358256 Sed03g2878 Sed-Chr3:45956116 3.20E-157 transposed
Sed11g0505 Sed-Chr11:4816732 Sed03g2878 Sed-Chr3:45956116 2.50E-141 wgd
Sed11g0505 Sed-Chr11:4816732 Sed03g2878 Sed-Chr3:45956116 2.50E-141 wgd
Sed12g2251 Sed-Chr12:32881719 Sed03g2878 Sed-Chr3:45956116 3.80E-86 wgd
Sed03g2878 Sed-Chr3:45956116 Sed08g0542 Sed-Chr8:3631186 4.10E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2878 - - - 0.0