Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2878 | ATGAGTTTAATTGAAGAATATTTGCCAGCAATGGCGATGTTAGGAATTCAAATGATTTACTCCATTGTGGCCCTCGTTTCAAGGGCTGCCCTCTTGGAGGGCATGAGTCCTAGAGTCTTCATTGTTTATAGACAGGCCATTGCCACTCTCTTCATTTCACCCATTGCTTATTTCTCCAGGTCGAAATCCATGAAGCTATCATTGGATTTGAGGAGCTTTTACCTGATCTTCCTTGCTGCTTTTATTGGTACAACGATGAACCTCAATTTTTTCTTCGAGGGACTTTTACTAGGCAGCTCGTCGTTAGCGACAGCGATGGAGAATCTGATTCCAGCAATAACATTTGCGATAGCGGCAATGGTTGGAATGGAGAGTGTGAAGATAAGAAGCTTGAGGAGCATGGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTTCATGGCCCTTATGAGGGGCCCAAAGCTTCTTAATGCCACACAAGGATTGTCTTTTATTTTTGCTTTGAAAAGTGGAACTGACCAAGCTTGGTTGTTGGGTTGCTTGAGTCTCTTTGCTAGCTGTTGTTGCTGGTCCATTTGGCTCATTTTGCAGGTACCAGCGATTGAAAGCTATCCCGACAAGCTAGGTTTATCAGCATGGACATGTTTCATTTCCTTAATACAATCAATCATATTCACTTTGTCGGTAGAGGAAGCAAATATAGAAATATGGAAAATACATTCAAGAACTGAGCTTATTTGTTACCTCTTTTCGGGAATTTTTGGGTCAGGAGTGGCTTATTTTCTTCAAGCTTGGGGTATTTCAAAAAGGGGCCCTGTATTTTCTGCAATTTTCAACCCTTTTAACACTATTATTACAACTATTTTGGCAGCCATATTTCTTCATGAGGAGATTTACACTGGAAGCTTGTTGGGGAGTGTGGTTGTAATTATTGGATTATATGTTGTTCTTTGGGGAAAAGCCCATGATTATGTGAAAGAAGGCACAGAAAAGTGCAGTGTTGAAAAACAAGAAGAGAATGGTGAATCAGCTTCAATTCAAACAGATAGCTATAGAATTGATTTGGAGGCACCCCTTTTGTCTAAAGAGTGTATAATTCAAAGTGACAACTAA | 1122 | 40.73 | MSLIEEYLPAMAMLGIQMIYSIVALVSRAALLEGMSPRVFIVYRQAIATLFISPIAYFSRSKSMKLSLDLRSFYLIFLAAFIGTTMNLNFFFEGLLLGSSSLATAMENLIPAITFAIAAMVGMESVKIRSLRSMAKIGGTVVCVSGAMFMALMRGPKLLNATQGLSFIFALKSGTDQAWLLGCLSLFASCCCWSIWLILQVPAIESYPDKLGLSAWTCFISLIQSIIFTLSVEEANIEIWKIHSRTELICYLFSGIFGSGVAYFLQAWGISKRGPVFSAIFNPFNTIITTILAAIFLHEEIYTGSLLGSVVVIIGLYVVLWGKAHDYVKEGTEKCSVEKQEENGESASIQTDSYRIDLEAPLLSKECIIQSDN | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 45956116 | 45960563 | - | Sed0008435.1 | Sed03g2878 | 708365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2878 | 373 | PANTHER | WAT1-RELATED PROTEIN | 11 | 338 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
Sed03g2878 | 373 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 219 | 324 | - | - | |
Sed03g2878 | 373 | Pfam | EamA-like transporter family | 181 | 320 | IPR000620 | GO:0016020(InterPro) | |
Sed03g2878 | 373 | Pfam | EamA-like transporter family | 12 | 134 | IPR000620 | GO:0016020(InterPro) | |
Sed03g2878 | 373 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 43 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2878 | Sed-Chr3:45956116 | Sed11g0507 | Sed-Chr11:4834483 | 5.80E-138 | dispersed | |
Sed03g2878 | Sed-Chr3:45956116 | Sed03g2879 | Sed-Chr3:45967047 | 1.20E-188 | tandem | |
Sed04g2265 | Sed-Chr4:36358256 | Sed03g2878 | Sed-Chr3:45956116 | 3.20E-157 | transposed | |
Sed11g0505 | Sed-Chr11:4816732 | Sed03g2878 | Sed-Chr3:45956116 | 2.50E-141 | wgd | |
Sed11g0505 | Sed-Chr11:4816732 | Sed03g2878 | Sed-Chr3:45956116 | 2.50E-141 | wgd | |
Sed12g2251 | Sed-Chr12:32881719 | Sed03g2878 | Sed-Chr3:45956116 | 3.80E-86 | wgd | |
Sed03g2878 | Sed-Chr3:45956116 | Sed08g0542 | Sed-Chr8:3631186 | 4.10E-83 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2878 | - | - | - | 0.0 |