Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2879 ATGGGTTTTATTGAAGAATATTTGCCAGCAATGGCAATGTTAGGAATTCAATTGATTTATGCCATTGTGACCCTCGTCTCTAGGGCTGCCCTCTTGGAGGGCATGAGTCCTAGAGTCTTCATTGTTTATAGACAGGCCATTGCCACTCTCTTTATTTCACCCATTGCTTATTTCTCCAGGTCGAAATCCATAAAGGTATCATTGGACTTTAGGAGCTTTTACCTCATCTTCCTCGCTGCTCTTGTCGGTACGACGATGAACCTCAATTTTTTCTTCGAGGGACTTTTATTAGGAAGCTCGTCATTAGCTACAGCGATGGAGAATCTGATTCCAGCGGTGACGTTTGTAATAGCGGCAATGGTCGGAATGGAGAGTGTTAAGATAAGGAGCTTGAGGAGCATGGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGCATGGCTCTTATGAGGGGTCCAAAACTTCTTAATGCCTCACAAGGATTGTTTTCTATTTTTGATTTGAAAAGTGGAACTGACCAAGCTTGGTTGTTGGGTTCCTTAAGTCTCTTTGGGAGCTGTTGTTGCTGGTCCCTTTGGCTCATTTTGCAGGTACCAGCTATAGAAAGTTATCCGGACAAGCTATGTTTATCAGCATGGACATGTTTTTTTTCCTTAATACAATCAATCATATTCACTTTATCAGTAGAGGAAGCAAATATAGAAATATGGAAAATACATTCAAGAACTGAAGTTGTTTGTTACCTCTTCTCGGGAATTTTTGGGTCAGGTGTGGCCTATTTTCTTCAAGCTTGGGGTATTTCAAAAAGGGGCCCTGTATTTTCTGCCATTTTCAACCCTTTTTGCACTATTATTACAACTATTTTGGCAGCTATATTTCTTCGTGAGGAGATTTACACAGGAAGCTTGTTGGGGAGTGTGGTTGTAATTATTGGATTATATGTTGTTCTTTGGGGAAAAGCCCATGATTATGTGAAAGAAGGCACAGAAAAGTGCAGTGTTGAAAAACAAGAAGAGAATGGTGAATCAGCTTCAATTCAAACAGATAGCTATAGAATTGATTTGGAGGCACCCCTTTTGTCTAAAGAGTGTATAATTCAAAGTGACAACTAA 1122 40.55 MGFIEEYLPAMAMLGIQLIYAIVTLVSRAALLEGMSPRVFIVYRQAIATLFISPIAYFSRSKSIKVSLDFRSFYLIFLAALVGTTMNLNFFFEGLLLGSSSLATAMENLIPAVTFVIAAMVGMESVKIRSLRSMAKIGGTVVCVSGAMCMALMRGPKLLNASQGLFSIFDLKSGTDQAWLLGSLSLFGSCCCWSLWLILQVPAIESYPDKLCLSAWTCFFSLIQSIIFTLSVEEANIEIWKIHSRTEVVCYLFSGIFGSGVAYFLQAWGISKRGPVFSAIFNPFCTIITTILAAIFLREEIYTGSLLGSVVVIIGLYVVLWGKAHDYVKEGTEKCSVEKQEENGESASIQTDSYRIDLEAPLLSKECIIQSDN 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45967047 45971337 - Sed0010181.1 Sed03g2879 708366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2879 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 150 - -
Sed03g2879 373 PANTHER WAT1-RELATED PROTEIN 11 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g2879 373 Pfam EamA-like transporter family 181 320 IPR000620 GO:0016020(InterPro)
Sed03g2879 373 Pfam EamA-like transporter family 11 134 IPR000620 GO:0016020(InterPro)
Sed03g2879 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2879 Sed-Chr3:45967047 Sed04g2265 Sed-Chr4:36358256 9.80E-162 dispersed
Sed03g2878 Sed-Chr3:45956116 Sed03g2879 Sed-Chr3:45967047 1.20E-188 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2879 - - - 0.0