Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2909 ATGATTGATTGTGGTTACAAGTCAAAACTGATGGGTGGTCAGCGAGAAAAATTCGTGAGGTTGGATGACTTGGATTCTAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGCGGTCTTAATATAGATGGGTTTAACCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCTGAAGGACTTAAGTCAATTGGTCGATCACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTTAATAAACTTTTTGTCATATCATGTATTTTAGCAGTATCTGTGGACCCATTATTTTTTTATGTTCCTGTCATTGAAACCTCAAACTGTCTTAGCATTGATAGAAAGCTGTCAATTATAGTGACAACGTTGCGGACAGTTATTGATGTCTTCTATCTTATTCATATGGCTCTCCAGTTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCAAAAATAGCAAAGCGATACTTGCGGCGCTATTTCATCATTGATTTGCTGTCTGTGCTGCCCCTCCCACAGATTGTGGTTTGGAAATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTATAATCATATTCCTTCAATATATCCCAAGATTTCTTAGAATGCTACCATTGACTTCAGAATTGAAAAGGACAACAGGTGTATTTGCAGAAACTGCCTGGGCAGGTGCTGCATATTATTTGCTGTTATATATGCTTGCAAGTCATATAGTTGGAGCCTTATGGTACTTATTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTTTTGTAGTGCTCCTTGCAAGAAAGATTTCTTATATTGTGGTAATCAAGACATGGAAGGTTATGCAACTTGGAACCAGACTGATGTCGAGTCAAGTTGTAAACCTGCTGATGGTAATGATCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGGCCTCTGGCATCGCTTCATCCAACAATTTTATCGTCAAATATTGTTACTGTCTTTGGTGGGGGCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTATCCGGGTGAAGTGATCTTTTCTATTGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTCGAGGAAATGAGAGTGAAAAAGCGTGATTCGGAGCAGTGGATGCATCACCGCTTGCTGCCACAAGAACTTCGAGAGAGAGTCAGGCGTTACGATCAGTACAAGTGGTTGGAGACCCGTGGAGTGGATGAACAGAGTTTGGTTCAAACTCTGCCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCCATCTGTGAGCGGCTGAAACCATGTTTGTTTACAGAGTACACTTACATAGTCCGTGAAGGTGATCCTGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAAAGTGTGACTACCGATGGTGGGCGGAGTGGATTTTTCAACAGTACCTTTCTGAAAGAAGGTGACTTTTGTGGCGAAGAGCTTTTGACTTGGGCTCTGGACCCGAAATCTGGTTCGAATCTTCCAACTTCTACAAGGACAGTAAAGGCCATAACCGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTAAAATTTGTGGCTAGTCAGTTCCGGCGTCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGGCCTGGGCTGCTTGCTTCATCCAAGCGGCGTGGCGTCGGTATTCGAAGAGGAAGACAATGGAACTTCGTCAAAAAGAAGAAGTTGCTGAGGGATCATCTCAAACTGCCACAAGTGGAGGCTCTTACAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGAGGCATTCAGCGATACCGCGATGCAAAGAGTGCTCAGGAGTTGATAAAGTTGCAAAAGCCTCCAGAGCCAGATTTTAGTGCCGATGATGCCGATTGA 2181 43.1 MIDCGYKSKLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGLNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFFNKLFVISCILAVSVDPLFFYVPVIETSNCLSIDRKLSIIVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLRRYFIIDLLSVLPLPQIVVWKFLQRSKGSDVYVTKQALLIIIFLQYIPRFLRMLPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKFCSAPCKKDFLYCGNQDMEGYATWNQTDVESSCKPADGNDQFDFGIFQQALASGIASSNNFIVKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNSTFLKEGDFCGEELLTWALDPKSGSNLPTSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRAWAACFIQAAWRRYSKRKTMELRQKEEVAEGSSQTATSGGSYSIRATFLASKFAANALRGIQRYRDAKSAQELIKLQKPPEPDFSADDAD 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46224097 46239440 + Sed0024279.1 Sed03g2909 708396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2909 726 Gene3D - 110 425 - -
Sed03g2909 726 Gene3D Helix hairpin bin 428 491 - -
Sed03g2909 726 SUPERFAMILY Voltage-gated potassium channels 101 422 - -
Sed03g2909 726 ProSiteProfiles cAMP/cGMP binding motif profile. 500 584 IPR000595 -
Sed03g2909 726 Pfam Cyclic nucleotide-binding domain 525 610 IPR000595 -
Sed03g2909 726 CDD CAP_ED 500 631 IPR000595 -
Sed03g2909 726 SUPERFAMILY cAMP-binding domain-like 430 620 IPR018490 -
Sed03g2909 726 FunFam Cyclic nucleotide-gated ion channel 1 427 491 - -
Sed03g2909 726 FunFam Cyclic nucleotide-gated ion channel 1 498 616 - -
Sed03g2909 726 Gene3D Jelly Rolls 498 618 IPR014710 -
Sed03g2909 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 713 - -
Sed03g2909 726 Pfam Ion transport protein 108 426 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2909 726 ProSiteProfiles IQ motif profile. 636 665 - -
Sed03g2909 726 SMART cnmp_10 500 631 IPR000595 -
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 164 173 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 281 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 153 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 463 470 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 369 386 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 413 422 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed03g2909 726 PRINTS EAG/ELK/ERG potassium channel family signature 395 406 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2909 Sed-Chr3:46224097 Sed06g0593 Sed-Chr6:5238145 1.70E-290 dispersed
Sed11g0465 Sed-Chr11:4316016 Sed03g2909 Sed-Chr3:46224097 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2909 K05391 - csv:101219180 1335.09