Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2943 ATGGCATATGATCTAAACCAAGAGCTTTCAAAGGAAACAAGCATATTTGGTCTAAAAGTATGGGAAGTAATTGGAATTGGAGTAGGTTTATTCATAATCTCAATCCTTTGCATTCTCTCACTCTGTTTAACCTCACTCAACAAGAAGTCAAAAAAATCACCAAACTCCAACACCCAAATCCCATCTCATTCAAAGGACATTAATGCAATCCACACAACCACCACTCACAAATCAAAACCACCAACAATTCCAAAAAATGGCAACAATTACAGCACTGAATCAGGGTCATTATTTCACCCATTGAGCTGTGGATTTGGATCACAATCAGGAGATGAAGGCAGCAGCTCGGGCACCGTCACGACAACGATGTACCGACGCTCGACGTCGCAGACAACGACAACGGTTCCTTCGCCGCTGTTGGGACTGCCCGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACATTGAGAGAGCTGGATTTGGCCACCAATTTGTTCTCAGAGGAGAATTTGATTGGTGAAGGAGGGTATGGAGTTGTGTATAGAGGATGCTTGTTGAATGGGACACCAGTGGCTGTTAAGAAGATTTTTAATGGACAGGGCCAAGCAGAGAAGGAATTCAGAGCAGAAGTTGAAGCAATTGGGCATGTGAGACATAAAAATCTTGTTCGTCTATTGGGATATTGTGTTGAAGGGACTCATAGGATGCTGGTTTATGAGTACATAAAAAATGGAAGCTTAGAGCTGTGGTTACATGGAGGAATGGGAGAGAATATATATCTTACATGGGAGGCTAGAATGAAGATCATGGTGGGGACAGCCAAAGGACTTGCATACTTACACGAGGCCATTGAACCGAAGGTGATACATCGAGATATCAAAGCTAGCAATATACTTATTGATGAAAATTTCAATGCCAAAGTTTCAGATTTTGGCCTGGCAAAGTTGATGGATGCTAGGAAGACTCATGTCACAACAAGAGTTATGGGGACATTTGGATACGTGGCTCCAGAATATGCAAACACCGGACTTTTGAATGAAAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTAGTTGAGACAATCACGGGAAAAGATCCGGTAGACTATGGACGTCCATCTAAGCAGGTGAATGTGGTGGATTGGCTAAAAATGATGATTGGAAGTAGGAGATGTGAAGAAGTGGTTGACCCAAAGTTAGGGTTTGGAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGTTTTATTGGTTGCTTTGAGATGTGTGGATCCTCAATATGACAAGAGACCAAAAATGAGTCAAGTTGTTAGAATGCTTGAATCTCAAGATTCTATTTCTTATACTTAA 1347 42.02 MAYDLNQELSKETSIFGLKVWEVIGIGVGLFIISILCILSLCLTSLNKKSKKSPNSNTQIPSHSKDINAIHTTTTHKSKPPTIPKNGNNYSTESGSLFHPLSCGFGSQSGDEGSSSGTVTTTMYRRSTSQTTTTVPSPLLGLPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYRGCLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCVEGTHRMLVYEYIKNGSLELWLHGGMGENIYLTWEARMKIMVGTAKGLAYLHEAIEPKVIHRDIKASNILIDENFNAKVSDFGLAKLMDARKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGKDPVDYGRPSKQVNVVDWLKMMIGSRRCEEVVDPKLGFGGRPSTRGLKRVLLVALRCVDPQYDKRPKMSQVVRMLESQDSISYT 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46426726 46432304 + Sed0012651.1 Sed03g2943 708430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2943 448 FunFam Putative receptor-like serine/threonine-protein kinase 242 447 - -
Sed03g2943 448 Gene3D Transferase(Phosphotransferase) domain 1 242 447 - -
Sed03g2943 448 CDD STKc_IRAK 172 440 - -
Sed03g2943 448 Gene3D Phosphorylase Kinase; domain 1 144 241 - -
Sed03g2943 448 ProSiteProfiles Protein kinase domain profile. 166 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2943 448 FunFam serine/threonine-protein kinase PBS1-like 142 241 - -
Sed03g2943 448 SMART serkin_6 166 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2943 448 PANTHER OS01G0323000 PROTEIN 1 444 IPR052232 -
Sed03g2943 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2943 448 Pfam Protein kinase domain 167 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2943 448 SUPERFAMILY Protein kinase-like (PK-like) 146 440 IPR011009 -
Sed03g2943 448 MobiDBLite consensus disorder prediction 48 67 - -
Sed03g2943 448 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2943 Sed-Chr3:46426726 Sed05g1861 Sed-Chr5:32038219 7.40E-148 dispersed
Sed03g2943 Sed-Chr3:46426726 Sed05g1860 Sed-Chr5:32038219 7.40E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78946 PF00069 Pkinase 3.60E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2943 - - - 0.0