Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2950 ATGGAGGGAGATAATATGACAGCACTTTTTGGTATGATTCTTTTGCAAATTTGCTATGCTGGTTTGAACATTGTCTCAAAGCTGTCCATGAAATCTGGAATGAACCCTTTAGTTCTCATCACTTACAGGCAACTCTTTGGCAGTCTTGCCATTGCTCCATTTGCTTTCTTCATTGAAAGGAAAACAAGGCCAAAGATTACACTTTCTGTTCTGTTACAAATTCTGCTCTGTTCCTTGTCAGGAGCAACTGGGAATCAGATATTCTTCTTTGTTGGGTTGAAGTTTACAAACCCAACTGTTTCATGTGCCATGACCAATATTCTTCCTGCTGCTACTTTTATTCTTGCTGTTCTTTTCAGACAGGAGAGTGTGAGAATCAAGACCAAGCCTGGTTTTGCAAAGGTAGCAGGGACAGTTGTGTGTGTATGTGGAGCAATGTTGCTGTCTTTCTACCATGGACACATCATTGGCTTGGGTGAATCCAAAATTCACTGGCCATATGTTGAGAGAATGATGAAAACAAAACCGAACCATCGAGAAAACCGCATCCTCGGCTCCATTTTGTTGCTTTGCAGCTCATTTTCTTGGGCGTTATGGTTCGTTGTCCAAGCAAAATTGAGTGTCAAGTTTAAGGCTCCCTATACAAGTACTGCATTGATGTGCTTCATGGCCTTTCTCGAATGTGGATTCGTAGCTGCGATTTTTGAGCACGACGCTGCCGCTTGGTCTTTGAAAAGCACGATTCGACTCATCTCAAGTCTTTACACGGGGATTGTGTGTTCTGCATTGACATTTAGCATCACTTCATGGATTATACAAAGGAAAGGCCCTCTCTTTGTCTCTATTTTCACCCCTTTATTGCTTATCATTGTGGCCATCCTCAGCTGGGCGCTCCTCCACGAGCAACTCCACGACGGAACTGTTATTGGCTCTATTTTCATCATCATTGGGCTTTATACTGTTCTATGGGGAAAGTTCAAAGAGATGAAGGTTGGAGATCACAACATGGAAAAGCCAAATGGAATCAGTCTAAATATTGATGAGAAATTTGATATGGAAATGCAAATCACAAACATAACATGA 1083 41.74 MEGDNMTALFGMILLQICYAGLNIVSKLSMKSGMNPLVLITYRQLFGSLAIAPFAFFIERKTRPKITLSVLLQILLCSLSGATGNQIFFFVGLKFTNPTVSCAMTNILPAATFILAVLFRQESVRIKTKPGFAKVAGTVVCVCGAMLLSFYHGHIIGLGESKIHWPYVERMMKTKPNHRENRILGSILLLCSSFSWALWFVVQAKLSVKFKAPYTSTALMCFMAFLECGFVAAIFEHDAAAWSLKSTIRLISSLYTGIVCSALTFSITSWIIQRKGPLFVSIFTPLLLIIVAILSWALLHEQLHDGTVIGSIFIIIGLYTVLWGKFKEMKVGDHNMEKPNGISLNIDEKFDMEMQITNIT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46460938 46463373 + Sed0022349.1 Sed03g2950 708437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2950 360 PANTHER WAT1-RELATED PROTEIN 12 335 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g2950 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 151 - -
Sed03g2950 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 327 - -
Sed03g2950 360 Pfam EamA-like transporter family 8 149 IPR000620 GO:0016020(InterPro)
Sed03g2950 360 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2950 Sed-Chr3:46460938 Sed04g4020 Sed-Chr4:47865444 1.40E-80 dispersed
Sed05g0966 Sed-Chr5:8034085 Sed03g2950 Sed-Chr3:46460938 1.10E-26 dispersed
Sed03g2950 Sed-Chr3:46460938 Sed03g3111 Sed-Chr3:47810990 5.80E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2950 - - - 0.0