Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2975 ATGGGAAACTCCCATGTTAACCGCAAGCATTTCAACCATGGCGTAAATATATCTCGACCCAATAACGCTCATTCTCCTTCACATAAATACTACCCTTCTGGACCTGCGGCTTCTCAGAGTTCGACCTTGCCGGCGACAATGGAGTCCTTGCCCTACGCCCTCGTCGATTCGAGCCTTCGAGCCCTAGCCGGTCGGGCCGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTTACTAATTTGGAAGATGATGGTCCAGGATCACTTAGGTACGGATGTCGTATGAAAGAGCCCCTCTGGATTATCTTTGAAGTTTCGGGCACAATTCCCTTGTCTTCATATTTGAATGTGTCATCTTATAAGACTGTAGATGGTCGTGGTCAAAGAATAAAGCTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAACCTAATTCAAGGCACATATGGATAGATCGTTGTAGCCTCCGAGACTATGACGATGGCTTGATCGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTTACTTCTCACAACATGACAAGACAATGCTCATTGGAGCAGATCCTTCTCATGTTGGCGACCGATGCATCCGTGTCACGATCCACCACTGTTTTTTTGATGGTACACGTCAACGACATCCCCGTGTTAGATATGCTAAAATTCATCTTTACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAATGCAACATTTATGAAGCGGGACAGAAAAAGGTGGCATTCAAATATCTAACTGAAAAGGCACCAGACAAGGAAGAGCCTTCAAGTGGGTGCATATGGTCTGATGGAGATTTATTTGTATGTGGCACTCAAAGTGGGCTGTTAGCTGCAACTGCTGCTGGACAAAACTTGTTTCATCCCCCACAACATTACTCTGCTTGGACTGTGGAACCTCCTACAGATGCTCTGAAACAAATTCTCCAACATTGTACTGGTTTCCAAAACATACCAAGGCCCACTGATCAGCCACAGCATAAATCAACCTCGGTGACAAAGATAGAGTCCTTGCCCTACGCCCTTGTTGATTCAAGCCTTCGAGCCCTTGCCGGACAGGCCGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGCGTCACTAATTTGGAAGATGATGGTCCGGGATCGCTTAGGTACGGATGTCGTAGGAAAGAGCCCCTCTGGATTATCTTTGAAGTTTCAGGCACAATTCCCTTGTCTTCATATTTGAATGTGTCATCTTATAAGACTGTAGATGGTCGCGGTCAACGGATTAAACTTACACGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGGGGTCATGATGTTGATGGAATTCAAATTAAACCAAACTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGCTTGATCGATATCACCCGAGCAAGCACAGATATCACTATTTCTAGGTGCCACTTCTCACAACATGACAAGACAATGCTCATTGGAGCAGATCCCTCTAACATTTGCGACCGATGTATACGTGTCACGATCCACCACTGTTTTTTCGATGGTACACGTCAACGACATCCACGTGTTAGATACGCTCAAGTTCATCTTTACAATAACTACACAAGAAACTGGGGGATCTATGCTGTCGGTGCTAGTGTAGAATCGCAGATATACTCTCAATGCAACATATATGAAGCAGGGCATAAAAAGATGGCATTCAAATATATAACGGAAAAGGCACCAGACAAGGAAGAAGCTTCAAGTGGGTGCATATGGTCTGATGGAGATTTATTTGTTTGTGGCACTGAAAGTGGGCTGTTGGCTGCAAATGCTGCTCAACAAAACTTGTTTCATCCTTCAAAACATTACTCTGCTTGGACTGTGGAACCTCCAACAGATGCTCTCAAACAGATTCTCCAACATTGTACTGGTTGCCAAAACATACCTAGGCCCATTGATCATCCACAGGTACCTTAG 2151 44.77 MGNSHVNRKHFNHGVNISRPNNAHSPSHKYYPSGPAASQSSTLPATMESLPYALVDSSLRALAGRAEGFGRSAIGGLHGSVYCVTNLEDDGPGSLRYGCRMKEPLWIIFEVSGTIPLSSYLNVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRGSTDITISRCYFSQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRYAKIHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAPDKEEPSSGCIWSDGDLFVCGTQSGLLAATAAGQNLFHPPQHYSAWTVEPPTDALKQILQHCTGFQNIPRPTDQPQHKSTSVTKIESLPYALVDSSLRALAGQAEGFGRSAIGGLHGSVYCVTNLEDDGPGSLRYGCRRKEPLWIIFEVSGTIPLSSYLNVSSYKTVDGRGQRIKLTRKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSNICDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVGASVESQIYSQCNIYEAGHKKMAFKYITEKAPDKEEASSGCIWSDGDLFVCGTESGLLAANAAQQNLFHPSKHYSAWTVEPPTDALKQILQHCTGCQNIPRPIDHPQVP 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46625827 46633657 + Sed0017142.1 Sed03g2975 708462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2975 716 SMART amb_all 92 290 IPR002022 -
Sed03g2975 716 SMART amb_all 430 628 IPR002022 -
Sed03g2975 716 PRINTS Pollen allergen Amb family signature 403 420 IPR018082 -
Sed03g2975 716 PRINTS Pollen allergen Amb family signature 605 624 IPR018082 -
Sed03g2975 716 PRINTS Pollen allergen Amb family signature 583 602 IPR018082 -
Sed03g2975 716 PANTHER PECTATE LYASE 18-RELATED 58 350 IPR045032 GO:0030570(InterPro)
Sed03g2975 716 SUPERFAMILY Pectin lyase-like 63 368 IPR011050 -
Sed03g2975 716 MobiDBLite consensus disorder prediction 1 39 - -
Sed03g2975 716 SUPERFAMILY Pectin lyase-like 401 710 IPR011050 -
Sed03g2975 716 SMART pbh1 199 220 IPR006626 -
Sed03g2975 716 SMART pbh1 537 558 IPR006626 -
Sed03g2975 716 SMART pbh1 513 534 IPR006626 -
Sed03g2975 716 SMART pbh1 148 173 IPR006626 -
Sed03g2975 716 SMART pbh1 175 196 IPR006626 -
Sed03g2975 716 SMART pbh1 486 511 IPR006626 -
Sed03g2975 716 Gene3D - 53 359 IPR012334 -
Sed03g2975 716 Gene3D - 391 698 IPR012334 -
Sed03g2975 716 Pfam Pectate lyase 459 621 IPR002022 -
Sed03g2975 716 Pfam Pectate lyase 121 283 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2975 Sed-Chr3:46625827 Sed06g2021 Sed-Chr6:44316771 2.30E-42 dispersed
Sed03g2975 Sed-Chr3:46625827 Sed08g2039 Sed-Chr8:34637426 2.00E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2975 K01728 - csv:101219724 660.603