Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2986 ATGAATATCCAAGCCAGCCAATGGTGTGTATCAGCAAAGCCTTTTCTTGCTGTGGTGTTCTTGCAGTTTGGGCTTGCAGGAATGGATATTCTGTCAAAAGCAGCTCTCAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACCATCGTTATAGCTCCTTTTGCACTCATCTTTGACAAGAAGGTGAGGCCAAAGATGACAATCCCAGTCTTTGCCAAGTTGATGGCACTCAGCTTGCTAGAGCCTGTGATTGATCAGAACTTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATAACCTTTGTAATGGCTTGGATCCTCAGGCTAGAGAAGGTTAAAATCAAAAGCATAAGAAGCCAAGCAAAGATAGTGGGGACCATAGCAACAGTAGGAGGAGCAATGATAATGACACTGTTAAAGGGTCCAATCTTGGAGCTATTTTGGGTGAAAGAAAGTACAAATCATCAACAACAACAGCAACAAAGAGGTGATATGAGCCTTGAGCACACAATCAAAGGTTCAATCATGATCACAATTGGGTGTTTCAGTTGGGCCTGCTTCATGATTCTTCAGGCAATTACATTGAAAGATTACCCAGCGGAGCTTTCTCTCACGGCTTGGATCTGCCTTTTGGGCACTGCGGAGGGCACTGTTGTGGCTTTGGTGATGGAAAGAGGAAATGCCGCCGTTTGGTCTATCACTTGGGGAACTAAATTGCTCGCTGCTGTTTATAGTGGGATATTTTGTTCGGGACTTGCTTATTACATTCAAGGAATAGTGATGAAAGACAAAGGACCAGTGTTTGTGACAGCATTTAGCCCTTTGAGTATGATCATGGTGGCAATTATGAGTTCTTTTGTTCTGGGCGAACGACTCTACTTGGGAAGGATACTTGGAGCTGCTGTCATTATTGTGGGACTTTACCTTGTTGTTTGGGGTAAAAATAAAGATGAAAATCCCTCAAATGAAGATGTGAAACTACCCACCAAGCAAACAAAAGAAATGGAAGCAAACAAGATGGAAAGTTTAACAATTGAGCCATCTAATTTGGTTGATCTAAAGAATGTTAAAAAATAA 1131 42.09 MNIQASQWCVSAKPFLAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMALSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVKIKSIRSQAKIVGTIATVGGAMIMTLLKGPILELFWVKESTNHQQQQQQRGDMSLEHTIKGSIMITIGCFSWACFMILQAITLKDYPAELSLTAWICLLGTAEGTVVALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGIVMKDKGPVFVTAFSPLSMIMVAIMSSFVLGERLYLGRILGAAVIIVGLYLVVWGKNKDENPSNEDVKLPTKQTKEMEANKMESLTIEPSNLVDLKNVKK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46697725 46702099 - Sed0002595.1 Sed03g2986 708473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2986 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Sed03g2986 376 PANTHER WAT1-RELATED PROTEIN 16 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g2986 376 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020(InterPro)
Sed03g2986 376 Pfam EamA-like transporter family 21 135 IPR000620 GO:0016020(InterPro)
Sed03g2986 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2986 Sed-Chr3:46697725 Sed14g0459 Sed-Chr14:4628729 4.90E-145 dispersed
Sed04g1701 Sed-Chr4:31679149 Sed03g2986 Sed-Chr3:46697725 2.50E-31 dispersed
Sed01g2771 Sed-Chr1:22940492 Sed03g2986 Sed-Chr3:46697725 8.30E-97 wgd
Sed14g0458 Sed-Chr14:4628729 Sed03g2986 Sed-Chr3:46697725 1.30E-182 wgd
Sed03g2986 Sed-Chr3:46697725 Sed04g2820 Sed-Chr4:40128616 1.40E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2986 - - - 0.0