Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3008 ATGGCCGACAACGAGGACATTCAGCCTCTCGTCTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTCGGTCGCCCCCGCCATACGGGCGTTATGGTTGGAATGGGACAGAAAGATGCATATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGTCTCTTAAATACCCTATTGAGCATGGAATTGTTAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTCCGTGTCGCCCCCGAAGAACATCCAATTCTCCTCACCGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTCGAAACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCAGTTCTTTCGCTGTATGCAAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGCCACACAGTCCCCATCTACGAAGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCCGGTCGTGACTTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTATGAGCAAGAAATGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGCTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGTGCTGAGCGTTTCCGATGCCCGGAAGTGCTTTTCCAACCATCCATGATCGGTATGGAAGCTGCGGGTATTCATGAGTTGACATACAATTCCATCATGAAATGTGATGTCGATATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGCTCAACCATGTTTTCTGGAATTGGCGATAGAATGAGCAAGGAGGTCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCGCCTGAGAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAGTGCTTCTAA 1134 48.32 MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILSLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHELTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIGDRMSKEVTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46890130 46898926 + Sed0012758.1 Sed03g3008 708495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3008 377 Pfam Actin 5 377 IPR004000 -
Sed03g3008 377 FunFam Actin, muscle 182 273 - -
Sed03g3008 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sed03g3008 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Sed03g3008 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Sed03g3008 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sed03g3008 377 FunFam Actin, alpha skeletal muscle 330 377 - -
Sed03g3008 377 Gene3D - 140 340 - -
Sed03g3008 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sed03g3008 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Sed03g3008 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sed03g3008 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Sed03g3008 377 FunFam Actin, alpha skeletal muscle 255 329 - -
Sed03g3008 377 SMART actin_3 7 377 IPR004000 -
Sed03g3008 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Sed03g3008 377 Gene3D - 10 371 - -
Sed03g3008 377 PRINTS Actin signature 51 62 IPR004000 -
Sed03g3008 377 PRINTS Actin signature 63 85 IPR004000 -
Sed03g3008 377 PRINTS Actin signature 238 254 IPR004000 -
Sed03g3008 377 PRINTS Actin signature 142 161 IPR004000 -
Sed03g3008 377 PRINTS Actin signature 28 37 IPR004000 -
Sed03g3008 377 PRINTS Actin signature 117 130 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3008 Sed-Chr3:46890130 Sed12g1245 Sed-Chr12:8902651 1.00E-214 dispersed
Sed01g2744 Sed-Chr1:22170118 Sed03g3008 Sed-Chr3:46890130 2.70E-212 wgd
Sed14g0482 Sed-Chr14:4810504 Sed03g3008 Sed-Chr3:46890130 4.30E-70 wgd
Sed03g3008 Sed-Chr3:46890130 Sed04g2840 Sed-Chr4:40294983 5.60E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3008 K10355 - csv:101214246 740.339