Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3011 ATGGCGATCTCCGGGTTTCGAGCTCTTCAATGGTGGAAGAAATGGTCCAAGAAACACTCGGTAATTGCAGTCATCACCTTCGCCTTCATCGTTTTCGCCTTCTCTTTCTTCTCCGACTCTTCGCCCGTTGCAGACGCTGGAATCCACCAAGCTTTCGATCTCAGCCCAGCCCATGACCCTCATTTGGTTGACCTAACTTTGCTGCACATTGCCAAATCAAAAGGCGCTCTTTGTCTTGATGGGAGTTCGCCTGGATACCATTTTCAGAAAGGGTTGGGATCTGGTTCTACTAACTGGGTGCTTCACATTGAGGGAGGAGGTTGGTGCGATACAGCCGCGTCCTGTTCTTCGCGCAAAATGACCCCGTTAGGTTCATCAGATTACATGGATCGTCGTGTTCGTTTTTCTGGTATTTTGAGTAGCAATGCATCCAAAAATCCTGATTTCTATAATTGGAACAAAATCAAGATACGTTACTGCGATGGAGCATCATTTGCAAGCCATCCTGAGGGTGAAACAAAGAATGGAAATAAACTTTACTTCAGAGGCCAGCTCATCTGGGAAGCGCTTATGGATGAGCTCTTATCGGTTGGCTTGTCGAAAGCAAGGCAGGCTCTTCTCTCAGGGTGTTCTGCTGGGGGCTTGGCTACCCTTATACATTGTGATGACTTCAGAGAGCTTTTGCCGAAGGATGCAACAGTCAAGTGTTTAGCTGATGCTGGATTTTTCCTTGACGAGAAAGACGTATCGGGAAATCATACAATGAGATCTTTTTATCATGACGTTTTCAACCTACAGAACACTGCTAAAAGCTTACCCAAGGATTGCACAGCAACAGAAGAGCCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACATATAAGCACCCCAGTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGATACAACATGTCTTGGTACCAAATACAATAGATACTGCTGGCTCTTGGCAGAAATGCAGGCTTAATATTCATAAATGTGATCATGCTCAGCTTGAAATTCTTCAAGGGTTCAGAGACTCTTTGCTGAAGGCACTGAATGACTTCATGGACAGTAAGGAAGGTGGACTTTTTGTAAATTCTTGCTTCATCCATTGCCAAACATGGATGTCTGAGACATGGCATTCTCCCAATTCTCCAAGGATAAATAAGAGGACTATAGCAGAGGCCGTCGGGGATTGGTACTTCAAACGAAATCCCGTGAAGCTAATCGACTGCCCTTTTCCATGCAATCCTACCTGCATTCATATGGATTTTAGCTGA 1290 44.65 MAISGFRALQWWKKWSKKHSVIAVITFAFIVFAFSFFSDSSPVADAGIHQAFDLSPAHDPHLVDLTLLHIAKSKGALCLDGSSPGYHFQKGLGSGSTNWVLHIEGGGWCDTAASCSSRKMTPLGSSDYMDRRVRFSGILSSNASKNPDFYNWNKIKIRYCDGASFASHPEGETKNGNKLYFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADAGFFLDEKDVSGNHTMRSFYHDVFNLQNTAKSLPKDCTATEEPSKCLFPQEIIKHISTPVFLVNPAYDFWQIQHVLVPNTIDTAGSWQKCRLNIHKCDHAQLEILQGFRDSLLKALNDFMDSKEGGLFVNSCFIHCQTWMSETWHSPNSPRINKRTIAEAVGDWYFKRNPVKLIDCPFPCNPTCIHMDFS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46901115 46908619 + Sed0004714.3 Sed03g3011 708498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3011 429 PANTHER NOTUM-RELATED 39 425 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Sed03g3011 429 Pfam Pectinacetylesterase 61 408 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3009 Sed-Chr3:46901115 Sed03g3011 Sed-Chr3:46901115 3.20E-265 dispersed
Sed03g3011 Sed-Chr3:46901115 Sed04g0383 Sed-Chr4:2750428 1.20E-123 dispersed
Sed03g3010 Sed-Chr3:46901115 Sed03g3011 Sed-Chr3:46901115 3.60E-187 tandem
Sed03g3011 Sed-Chr3:46901115 Sed03g3012 Sed-Chr3:46901115 5.90E-187 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3011 K19882 - csv:101206380 757.673