Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3012 ATGGCGATCTCCGGGTTTCGAGCTCTTCAATGGTGGAAGAAATGGTCCAAGAAACACTCGGTAATTGCAGTCATCACCTTCGCCTTCATCGTTTTCGCCTTCTCTTTCTTCTCCGACTCTTCGCCCGTTGCAGACGCTGGAATCCACCAAGCTTTCGATCTCAGCCCAGCCCATGACCCTCATTTGGTTGACCTAACTTTGCTGCACATTGCCAAATCAAAAGGCGCTCTTTGTCTTGATGGGAGTTCGCCTGGATACCATTTTCAGAAAGGGTTGGGATCTGGTTCTACTAACTGGGTGCTTCACATTGAGGGAGGAGGTTGGTGCGATACAGCCGCGTCCTGTTCTTCGCGCAAAATGACCCCGTTAGGTTCATCAGATTACATGGATCGTCGTGTTCGTTTTTCTGGTATTTTGAGTAGCAATGCATCCAAAAATCCTGATTTCTATAATTGGAACAAAATCAAGATACGTTACTGCGATGGAGCATCATTTGCAAGCCATCCTGAGGGTGAAACAAAGAATGGAAATAAACTTTACTTCAGAGGCCAGCTCATCTGGGAAGCGCTTATGGATGAGCTCTTATCGGTTGGCTTGTCGAAAGCAAGGCAGGCTCTTCTCTCAGGGTGTTCTGCTGGGGGCTTGGCTACCCTTATACATTGTGATGACTTCAGAGAGCTTTTGCCGAAGGATGCAACAGTCAAGTGTTTAGCTGATGCTGGATTTTTCCTTGACGAGAAAGACGTATCGGGAAATCATACAATGAGATCTTTTTATCATGACGTTTTCAACCTACAGAACACTGCTAAAAGCTTACCCAAGGATTGCACAGCAACAGAAGAGCCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACATATAAGCACCCCAGTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGATACTGCTGGCTCTTGGCAGAAATGCAGGCTTAATATTCATAAATGTGATCATGCTCAGCTTGAAATTCTTCAAGGGTTCAGAGACTCTTTGCTGA 1026 45.22 MAISGFRALQWWKKWSKKHSVIAVITFAFIVFAFSFFSDSSPVADAGIHQAFDLSPAHDPHLVDLTLLHIAKSKGALCLDGSSPGYHFQKGLGSGSTNWVLHIEGGGWCDTAASCSSRKMTPLGSSDYMDRRVRFSGILSSNASKNPDFYNWNKIKIRYCDGASFASHPEGETKNGNKLYFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADAGFFLDEKDVSGNHTMRSFYHDVFNLQNTAKSLPKDCTATEEPSKCLFPQEIIKHISTPVFLVNPAYDFWQILLALGRNAGLIFINVIMLSLKFFKGSETLC 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46901115 46908619 + Sed0004714.4 Sed03g3012 708499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3012 341 Pfam Pectinacetylesterase 61 313 IPR004963 GO:0016787(InterPro)
Sed03g3012 341 PANTHER NOTUM-RELATED 39 311 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3010 Sed-Chr3:46901115 Sed03g3012 Sed-Chr3:46901115 1.60E-203 dispersed
Sed03g3012 Sed-Chr3:46901115 Sed04g0383 Sed-Chr4:2750428 1.60E-81 dispersed
Sed03g3011 Sed-Chr3:46901115 Sed03g3012 Sed-Chr3:46901115 5.90E-187 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3012 K19882 - csv:101206380 529.635