Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3065 ATGGGAAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTGAAGCCAATGGTTGCTCAACCATTGGGAATGAAGATTTGGGTTCCCAGTCTCGTCTTAGTGTAGGCATGGAATCCGGGGCAAGTTGTCGTGTATGTCAATGTGTTGAATCTGACAGAAGGGGCGATGCTGTTTTAGGGTTTCTCGGCATTACTCCTCCGATAGTCGAAGCCATAAAAAGTGATGGAGATTCGAAGCCTGAGAAGCAGAGTGTAAAAGATGTTGATGGGTATTCTGTGCTGAAAAAAAATGTTAAAAGGGATTCTGGTTCTCTTGAGTTCATAGGCCCTAATGGGGAGGTTTTTGTTTGCAAAGCTGATATTGAAATGGGTTCATGTCATTATGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCTTGTGCTCTCAAGTGGTTTGTCAGCCACGGATCTACGGTTTGCGAAATCTGTGGATGTATTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGGACTGCTAGTGGTGAACCGAATCCAACGCAGACTCATACCAGTACTGTTATAGATCCCGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATCTCGTTGTGGTTTAGTCCTCATATTTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAACGTTGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCCGTTGAGGGTACTGGAATTCTCCTTGCTACGGGACTGCTTACTGTTACGCTTGCTTGCCTAATAGCTCCTCGTGTTGGAAAGAAAACTGCAAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTCTTTGTACTTACCAGGATAAAATATGGACCTGCACGATACTGGGCTATTTTGTTCATCTTTTGGTTCCTGGTGTTTGGCATCTGGGCATCGAGGACACACGCCGCTCATACGACGTAA 1086 44.38 MGKENLLQRVDDNAEANGCSTIGNEDLGSQSRLSVGMESGASCRVCQCVESDRRGDAVLGFLGITPPIVEAIKSDGDSKPEKQSVKDVDGYSVLKKNVKRDSGSLEFIGPNGEVFVCKADIEMGSCHYEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTASGEPNPTQTHTSTVIDPDAVAAVRRQRLSEISLWFSPHIYSSNNNSTAASQVVSEHLNTISENVVRAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHAAHTT 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47399729 47409993 + Sed0017157.3 Sed03g3065 708552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3065 361 ProSiteProfiles Zinc finger RING-CH-type profile. 109 173 IPR011016 GO:0008270(InterPro)
Sed03g3065 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Sed03g3065 361 PANTHER ZINC FINGER, RING-CH-TYPE 35 350 - -
Sed03g3065 361 SUPERFAMILY RING/U-box 132 168 - -
Sed03g3065 361 SMART ringv_2 126 167 IPR011016 GO:0008270(InterPro)
Sed03g3065 361 Pfam RING-variant domain 131 166 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3063 Sed-Chr3:47399729 Sed03g3065 Sed-Chr3:47399729 7.40E-207 dispersed
Sed03g3065 Sed-Chr3:47399729 Sed11g2183 Sed-Chr11:35549506 2.20E-09 dispersed
Sed03g3064 Sed-Chr3:47399729 Sed03g3065 Sed-Chr3:47399729 7.40E-207 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3065 - - - 0.0