Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3066 ATGGCTGCTGCTCAGCTCACTGGGTCTGTAATTTCTTTCAATGGGCTTCGACCCTGTGCGGTGAAATTCTCCCCTTCTGTTGCTAATGTGAGAGTGGGGGGTTTGGCTCACAGATCTTGCACTGGCTTGGTTGTCAGAGCGGCTACTGTGGTTGCTCCTAAGTACACTTCAATCAAGCCCTTGGGCGACAGAGTGTTGGTAAAGATAAAGGAAGCCGAAGAGAAGACCGATGGAGGGATCTTACTTCCAACGACAGCTCAATCGAAACCTCAAGGTGGGGAGGTTGTTGCAGTTGGAGAAGGCAAGTCGATTGGAAAGATTAAAGTGGAAGCACCTGTCAAGACTGGTGCTCAAGTTGTGTACTCCAAGTACGCTGGAACTGAGGTAGAGTTCAATGGTTCAAAGCATCTTATTTTGAAGGAAGATGATATAGTTGGCATACTAGAAACAGATGATGCCAAAGATCTTCAGCCCTTGAACGACAGGGTCTTGATCAAGGTGGCTGCGGCCGAGGAAAAGACAGCAGGAGGTTTGTTGCTTACTGAGGCATCCAAAGAGAAACCTTCAATCGGAACCGTGATAGCAGTTGGGCCTGGTAATCTCGACGAGGAAGGAAACCAGAAACCACTTACCATCGCATCGGGAAATAATGTGATGTACTCGAAGTACGCTGGGAACGAATTCAAGGGCAAAGATGGCTCTAATTACATTGCTTTGAGGGCTTCAGACGTGATTGCAATTCTATCTTAG 750 47.6 MAAAQLTGSVISFNGLRPCAVKFSPSVANVRVGGLAHRSCTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKSIGKIKVEAPVKTGAQVVYSKYAGTEVEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAAAEEKTAGGLLLTEASKEKPSIGTVIAVGPGNLDEEGNQKPLTIASGNNVMYSKYAGNEFKGKDGSNYIALRASDVIAILS 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47414672 47417809 + Sed0011309.1 Sed03g3066 708553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3066 249 SUPERFAMILY GroES-like 56 149 IPR011032 -
Sed03g3066 249 SUPERFAMILY GroES-like 155 248 IPR011032 -
Sed03g3066 249 PRINTS 10kDa chaperonin signature 58 73 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 PRINTS 10kDa chaperonin signature 114 126 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 PRINTS 10kDa chaperonin signature 80 101 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 PRINTS 10kDa chaperonin signature 135 148 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 CDD cpn10 57 148 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 PANTHER 10 KDA HEAT SHOCK PROTEIN 50 246 IPR020818 GO:0005524(InterPro)|GO:0005759(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0009536(PANTHER)|GO:0044183(InterPro)|GO:0046872(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Sed03g3066 249 Hamap Co-chaperonin GroES [groES]. 155 249 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 ProSitePatterns Chaperonins cpn10 signature. 156 180 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Sed03g3066 249 SMART Cpn10_2 155 248 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 SMART Cpn10_2 57 148 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 Hamap Co-chaperonin GroES [groES]. 57 149 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 PIRSF Cpn21 1 249 IPR017416 GO:0006457(InterPro)|GO:0046914(InterPro)|GO:1901671(InterPro)
Sed03g3066 249 ProSitePatterns Chaperonins cpn10 signature. 58 82 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Sed03g3066 249 Pfam Chaperonin 10 Kd subunit 58 147 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 Pfam Chaperonin 10 Kd subunit 156 247 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 CDD cpn10 156 248 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Sed03g3066 249 FunFam 20 kDa chaperonin, chloroplastic 51 150 - -
Sed03g3066 249 FunFam 10 kDa chaperonin 154 249 - -
Sed03g3066 249 Gene3D GroES chaperonin 152 249 IPR037124 GO:0006457(InterPro)
Sed03g3066 249 Gene3D GroES chaperonin 50 151 IPR037124 GO:0006457(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3066 Sed-Chr3:47414672 Sed14g0072 Sed-Chr14:807233 2.30E-111 dispersed
Sed14g0071 Sed-Chr14:807233 Sed03g3066 Sed-Chr3:47414672 1.80E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3066 K04078 - csv:101212396 424.091