Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3068 ATGGCTACACAACTACCTCCTTCATTAGACGCCACCGCCGAGCAACCCCCTCTCTTCGACGGAACCACGAGGCTGTATTCGGCTTATTTATGCCCATTTTCCCAACGTCTGTGGATCGCCCGGAATTACAAGGGGCTACGGGATATAATCAAGCTAGTTCCTCTCGACCTTTATAATAGGCCTGATTGGTACAAGAACGTATACCCTACAAACAAGGTTCCAACTCTAGAACACAATGGGAAAATTATTGGAGCAAGCCTTGATCTACTCAAATATATTGATACCAACTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTCTTAAAAGAGATTATGCCAAAGAGTTGCTATCGTACAGCGATACTTGTATCGGTGGATGTATCGGTGCAATAGTTGCTTCGTTTAAAGGCGACACCGCAAAGGAAGTAGCAGGTACTCATTTTGATTATTTGGAAAATGCTCTGCATAAATTTGATGGCCCCTTCTTCCTTGGAGATCAAATCAGTCAAGTGGATGTAGCTTATATTCCATTTATTGAAAGGTACCAAATTTTCTTATGGGAGCTTTCCAAGATTGATATCACTCAAGGAAGGCCTAAACTAGCTGTATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAAGAAACCAAATATGATCCTAAGGCCAACGTTGAACATTTCAAGAAGCGCTACATGCTTTGA 705 42.27 MATQLPPSLDATAEQPPLFDGTTRLYSAYLCPFSQRLWIARNYKGLRDIIKLVPLDLYNRPDWYKNVYPTNKVPTLEHNGKIIGASLDLLKYIDTNFEGPSLLPDDPLKRDYAKELLSYSDTCIGGCIGAIVASFKGDTAKEVAGTHFDYLENALHKFDGPFFLGDQISQVDVAYIPFIERYQIFLWELSKIDITQGRPKLAVWIEEFNKIDAYKETKYDPKANVEHFKKRYML 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47423015 47423719 - Sed0021605.1 Sed03g3068 708555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 162 181 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 97 111 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 21 36 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 Gene3D Glutaredoxin 1 98 - -
Sed03g3068 234 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 21 101 IPR004045 -
Sed03g3068 234 Pfam Glutathione S-transferase, N-terminal domain 25 100 IPR004045 -
Sed03g3068 234 SFLD Glutathione Transferase (cytosolic) 24 208 IPR040079 -
Sed03g3068 234 Gene3D - 99 234 - -
Sed03g3068 234 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 106 233 IPR010987 -
Sed03g3068 234 SUPERFAMILY GST C-terminal domain-like 97 231 IPR036282 -
Sed03g3068 234 FunFam Glutathione S-transferase L2, chloroplastic 1 98 - -
Sed03g3068 234 SFLD Main (cytGST) 24 208 - -
Sed03g3068 234 Pfam Glutathione S-transferase, C-terminal domain 145 206 - -
Sed03g3068 234 SUPERFAMILY Thioredoxin-like 16 102 IPR036249 -
Sed03g3068 234 PANTHER GLUTATHIONE S-TRANSFERASE L1 3 233 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0720 Sed-Chr2:45021248 Sed03g3068 Sed-Chr3:47423015 3.60E-117 dispersed
Sed02g0721 Sed-Chr2:45021248 Sed03g3068 Sed-Chr3:47423015 3.60E-117 dispersed
Sed02g0722 Sed-Chr2:45032798 Sed03g3068 Sed-Chr3:47423015 2.90E-108 dispersed
Sed03g3068 Sed-Chr3:47423015 Sed04g2736 Sed-Chr4:39574289 5.50E-70 dispersed
Sed03g3068 Sed-Chr3:47423015 Sed04g1311 Sed-Chr4:27396333 2.70E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3068 K00799 - csv:101211241 347.821