Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3068 ATGGCTACACAACTACCTCCTTCATTAGACGCCACCGCCGAGCAACCCCCTCTCTTCGACGGAACCACGAGGCTGTATTCGGCTTATTTATGCCCATTTTCCCAACGTCTGTGGATCGCCCGGAATTACAAGGGGCTACGGGATATAATCAAGCTAGTTCCTCTCGACCTTTATAATAGGCCTGATTGGTACAAGAACGTATACCCTACAAACAAGGTTCCAACTCTAGAACACAATGGGAAAATTATTGGAGCAAGCCTTGATCTACTCAAATATATTGATACCAACTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTCTTAAAAGAGATTATGCCAAAGAGTTGCTATCGTACAGCGATACTTGTATCGGTGGATGTATCGGTGCAATAGTTGCTTCGTTTAAAGGCGACACCGCAAAGGAAGTAGCAGGTACTCATTTTGATTATTTGGAAAATGCTCTGCATAAATTTGATGGCCCCTTCTTCCTTGGAGATCAAATCAGTCAAGTGGATGTAGCTTATATTCCATTTATTGAAAGGTACCAAATTTTCTTATGGGAGCTTTCCAAGATTGATATCACTCAAGGAAGGCCTAAACTAGCTGTATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAAGAAACCAAATATGATCCTAAGGCCAACGTTGAACATTTCAAGAAGCGCTACATGCTTTGA 705 42.27 MATQLPPSLDATAEQPPLFDGTTRLYSAYLCPFSQRLWIARNYKGLRDIIKLVPLDLYNRPDWYKNVYPTNKVPTLEHNGKIIGASLDLLKYIDTNFEGPSLLPDDPLKRDYAKELLSYSDTCIGGCIGAIVASFKGDTAKEVAGTHFDYLENALHKFDGPFFLGDQISQVDVAYIPFIERYQIFLWELSKIDITQGRPKLAVWIEEFNKIDAYKETKYDPKANVEHFKKRYML 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47423015 47423719 - Sed0021605.1 Sed03g3068 708555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 162 181 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 97 111 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 PRINTS Omega-class glutathione S-transferase signature 21 36 IPR005442 GO:0004364(InterPro)|GO:0005737(InterPro)
Sed03g3068 234 Gene3D Glutaredoxin 1 98 - -
Sed03g3068 234 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 21 101 IPR004045 -
Sed03g3068 234 Pfam Glutathione S-transferase, N-terminal domain 25 100 IPR004045 -
Sed03g3068 234 SFLD Glutathione Transferase (cytosolic) 24 208 IPR040079 -
Sed03g3068 234 Gene3D - 99 234 - -
Sed03g3068 234 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 106 233 IPR010987 -
Sed03g3068 234 SUPERFAMILY GST C-terminal domain-like 97 231 IPR036282 -
Sed03g3068 234 FunFam Glutathione S-transferase L2, chloroplastic 1 98 - -
Sed03g3068 234 SFLD Main (cytGST) 24 208 - -
Sed03g3068 234 Pfam Glutathione S-transferase, C-terminal domain 145 206 - -
Sed03g3068 234 SUPERFAMILY Thioredoxin-like 16 102 IPR036249 -
Sed03g3068 234 PANTHER GLUTATHIONE S-TRANSFERASE L1 3 233 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3068 K00799 - - csv:101211241 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0720 Sed-Chr2:45021248 Sed03g3068 Sed-Chr3:47423015 3.60E-117 dispersed
Sed02g0721 Sed-Chr2:45021248 Sed03g3068 Sed-Chr3:47423015 3.60E-117 dispersed
Sed02g0722 Sed-Chr2:45032798 Sed03g3068 Sed-Chr3:47423015 2.90E-108 dispersed
Sed03g3068 Sed-Chr3:47423015 Sed04g2736 Sed-Chr4:39574289 5.50E-70 dispersed
Sed03g3068 Sed-Chr3:47423015 Sed04g1311 Sed-Chr4:27396333 2.70E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g0333 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 5.9e-63 238.4
Sed09g1225 . 24 227 Glutathione S-transferase Gene Family AT4G02520 56.0 2.0e-58 223.4
Sed07g0332 . 5 210 Glutathione S-transferase Gene Family AT4G02520 55.5 2.8e-57 219.5
Sed09g1224 . 5 210 Glutathione S-transferase Gene Family AT4G02520 54.1 5.4e-56 215.3
Sed09g1223 . 5 210 Glutathione S-transferase Gene Family AT4G02520 53.1 5.9e-55 211.8
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 6.6e-62 235.0
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT2G02930 56.7 3.6e-60 229.2
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT2G02930 56.2 3.4e-58 222.6
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT2G02930 53.8 2.0e-55 213.4
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT2G02930 53.3 1.0e-54 211.1
Sed07g0333 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 8.2e-59 224.9
Sed09g1224 . 6 207 Glutathione S-transferase Gene Family AT1G02950 51.2 2.7e-54 209.9
Sed09g1223 . 6 207 Glutathione S-transferase Gene Family AT1G02950 52.2 3.5e-54 209.5
Sed09g1225 . 24 224 Glutathione S-transferase Gene Family AT1G02950 51.5 1.0e-53 208.0
Sed07g0332 . 6 207 Glutathione S-transferase Gene Family AT1G02950 50.2 9.7e-52 201.4
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.6 1.1e-64 244.2
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT1G02930 56.1 2.3e-59 226.5
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT1G02930 53.6 3.1e-56 216.1
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.1 5.3e-56 215.3
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT1G02930 52.2 7.6e-55 211.5
Sed07g0333 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 4.8e-65 245.4
Sed09g1225 . 24 228 Glutathione S-transferase Gene Family AT1G02920 57.1 1.9e-61 233.4
Sed09g1224 . 5 211 Glutathione S-transferase Gene Family AT1G02920 55.1 9.7e-58 221.1
Sed07g0332 . 5 211 Glutathione S-transferase Gene Family AT1G02920 55.6 6.3e-57 218.4
Sed09g1223 . 5 211 Glutathione S-transferase Gene Family AT1G02920 53.1 4.1e-56 215.7
Sed07g0333 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.4 5.3e-69 258.8
Sed07g0332 . 1 214 Glutathione S-transferase Gene Family AT2G47730 59.5 3.9e-64 242.7
Sed09g1224 . 5 214 Glutathione S-transferase Gene Family AT2G47730 55.9 4.0e-61 232.6
Sed09g1225 . 24 231 Glutathione S-transferase Gene Family AT2G47730 55.5 1.5e-60 230.7
Sed09g1223 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.3 9.9e-60 228.0
Sed03g2328 . 2 217 Glutathione S-transferase Gene Family AT3G09270 51.4 9.0e-62 234.6
Sed03g2329 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.5 2.6e-61 233.0
Sed03g2333 . 3 218 Glutathione S-transferase Gene Family AT3G09270 52.9 6.5e-60 228.4
Sed14g0672 . 30 240 Glutathione S-transferase Gene Family AT3G09270 51.2 1.2e-58 224.2
Sed07g0886 . 1 215 Glutathione S-transferase Gene Family AT1G78380 65.6 2.9e-81 299.3
Sed13g0672 . 198 401 Glutathione S-transferase Gene Family AT1G78380 66.8 2.6e-77 286.2
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G78380 68.9 2.6e-77 286.2
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G78380 69.9 6.3e-68 255.0
Sed03g0911 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 5.9e-66 248.4
Sed07g0886 . 7 215 Glutathione S-transferase Gene Family AT1G78370 62.2 1.5e-74 276.9
Sed13g0672 . 7 197 Glutathione S-transferase Gene Family AT1G78370 62.3 1.5e-69 260.4
Sed07g0887 . 7 196 Glutathione S-transferase Gene Family AT1G78370 62.6 1.3e-68 257.3
Sed03g0911 . 7 219 Glutathione S-transferase Gene Family AT1G78370 54.5 4.6e-63 238.8
Sed13g0673 . 7 176 Glutathione S-transferase Gene Family AT1G78370 64.7 3.0e-62 236.1
Sed07g0886 . 1 216 Glutathione S-transferase Gene Family AT1G78340 59.7 2.0e-74 276.6
Sed07g0887 . 1 195 Glutathione S-transferase Gene Family AT1G78340 65.1 1.3e-73 273.9
Sed13g0672 . 1 196 Glutathione S-transferase Gene Family AT1G78340 61.2 6.7e-70 261.5
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G78340 65.3 3.8e-65 245.7
Sed03g0911 . 4 219 Glutathione S-transferase Gene Family AT1G78340 53.2 1.4e-62 237.3
Sed12g0281 . 1 156 Glutathione S-transferase Gene Family AT1G78340 50.3 1.6e-39 160.6
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G78320 50.7 4.4e-57 218.8
Sed13g0673 . 3 176 Glutathione S-transferase Gene Family AT1G78320 55.2 1.9e-47 186.8
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G17180 64.5 2.8e-84 309.3
Sed13g0672 . 198 403 Glutathione S-transferase Gene Family AT1G17180 64.7 1.2e-74 277.3
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G17180 62.8 1.0e-73 274.2
Sed13g0673 . 4 176 Glutathione S-transferase Gene Family AT1G17180 67.1 1.4e-67 253.8
Sed03g0911 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.2 2.1e-66 250.0
Sed07g0886 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 1.5e-69 260.4
Sed07g0887 . 2 205 Glutathione S-transferase Gene Family AT1G17190 54.9 1.5e-64 243.8
Sed13g0672 . 3 218 Glutathione S-transferase Gene Family AT1G17190 54.2 9.5e-64 241.1
Sed13g0673 . 1 176 Glutathione S-transferase Gene Family AT1G17190 60.8 2.0e-61 233.4
Sed07g0886 . 3 216 Glutathione S-transferase Gene Family AT3G43800 53.5 3.3e-67 252.7
Sed07g0887 . 3 196 Glutathione S-transferase Gene Family AT3G43800 57.1 3.7e-63 239.2
Sed13g0672 . 3 197 Glutathione S-transferase Gene Family AT3G43800 53.3 3.3e-59 226.1
Sed13g0673 . 1 176 Glutathione S-transferase Gene Family AT3G43800 56.1 9.8e-56 214.5
Sed07g0886 . 1 220 Glutathione S-transferase Gene Family AT1G53680 54.2 2.3e-65 246.5
Sed03g0911 . 1 224 Glutathione S-transferase Gene Family AT1G53680 54.8 7.4e-64 241.5
Sed07g0887 . 1 196 Glutathione S-transferase Gene Family AT1G53680 58.2 3.4e-61 232.6
Sed13g0672 . 4 197 Glutathione S-transferase Gene Family AT1G53680 54.9 2.5e-59 226.5
Sed13g0673 . 3 176 Glutathione S-transferase Gene Family AT1G53680 54.0 1.4e-49 194.1
Sed01g0019 . 71 242 Glutathione S-transferase Gene Family AT2G02390 66.9 5.0e-61 231.9
Sed01g0017 . 52 222 Glutathione S-transferase Gene Family AT2G02390 66.1 1.6e-59 226.9
Sed12g0248 . 37 209 Glutathione S-transferase Gene Family AT2G02390 50.9 1.9e-47 186.8
Sed12g0249 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0244 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0245 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0246 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed12g0247 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.1 2.1e-46 183.3
Sed01g0017 . 11 220 Glutathione S-transferase Gene Family AT2G02380 63.3 1.3e-73 273.9
Sed01g0019 . 30 241 Glutathione S-transferase Gene Family AT2G02380 63.2 6.6e-73 271.6
Sed12g0249 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0244 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0245 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0246 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed12g0247 . 19 227 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-60 231.1
Sed07g1600 . 1 230 Glutathione S-transferase Gene Family AT5G41210 71.3 1.7e-93 340.1
Sed07g1600 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 3.0e-88 323.9
Sed02g0718 . 9 235 Glutathione S-transferase Gene Family AT5G02780 70.6 2.2e-90 329.7
Sed02g0722 . 9 225 Glutathione S-transferase Gene Family AT5G02780 65.8 1.4e-81 300.4
Sed04g1311 . 13 232 Glutathione S-transferase Gene Family AT5G02780 67.1 2.4e-81 299.7
Sed04g2736 . 77 296 Glutathione S-transferase Gene Family AT5G02780 64.4 5.6e-78 288.5
Sed02g0721 . 9 237 Glutathione S-transferase Gene Family AT5G02780 60.2 2.7e-72 269.6
Sed02g0720 . 9 237 Glutathione S-transferase Gene Family AT5G02780 60.2 2.7e-72 269.6
Sed04g2737 . 77 269 Glutathione S-transferase Gene Family AT5G02780 66.7 1.0e-71 267.7
Sed03g3068 . 9 230 Glutathione S-transferase Gene Family AT5G02780 59.8 1.5e-70 263.8
Sed02g0719 . 9 178 Glutathione S-transferase Gene Family AT5G02780 70.2 6.8e-68 255.0
Sed04g2736 . 26 294 Glutathione S-transferase Gene Family AT3G55040 56.3 5.6e-80 295.4
Sed02g0718 . 4 236 Glutathione S-transferase Gene Family AT3G55040 59.7 3.1e-78 289.7
Sed02g0722 . 7 226 Glutathione S-transferase Gene Family AT3G55040 60.2 4.5e-77 285.8
Sed04g2737 . 26 269 Glutathione S-transferase Gene Family AT3G55040 56.3 8.7e-73 271.6
Sed04g1311 . 3 227 Glutathione S-transferase Gene Family AT3G55040 55.8 2.5e-72 270.0
Sed03g3068 . 7 231 Glutathione S-transferase Gene Family AT3G55040 57.3 4.2e-67 252.7
Sed02g0721 . 7 238 Glutathione S-transferase Gene Family AT3G55040 53.8 1.3e-65 247.7
Sed02g0720 . 7 238 Glutathione S-transferase Gene Family AT3G55040 53.8 1.3e-65 247.7
Sed02g0719 . 4 177 Glutathione S-transferase Gene Family AT3G55040 60.3 6.7e-57 218.8
Sed02g0718 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.9 2.1e-93 339.7
Sed02g0722 . 6 228 Glutathione S-transferase Gene Family AT5G02790 69.6 7.4e-91 331.3
Sed04g1311 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.6 1.1e-89 327.4
Sed04g2736 . 71 296 Glutathione S-transferase Gene Family AT5G02790 62.1 2.9e-79 292.7
Sed03g3068 . 6 233 Glutathione S-transferase Gene Family AT5G02790 63.9 5.5e-78 288.5
Sed02g0721 . 6 240 Glutathione S-transferase Gene Family AT5G02790 61.2 2.1e-77 286.6
Sed02g0720 . 6 240 Glutathione S-transferase Gene Family AT5G02790 61.2 2.1e-77 286.6
Sed04g2737 . 71 269 Glutathione S-transferase Gene Family AT5G02790 64.0 1.0e-71 267.7
Sed02g0719 . 1 178 Glutathione S-transferase Gene Family AT5G02790 69.7 2.3e-71 266.5
Sed07g2442 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 3.4e-82 302.4
Sed07g2441 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 4.1e-80 295.4
Sed04g2794 . 1 212 Glutathione S-transferase Gene Family AT1G19570 62.9 1.3e-78 290.4
Sed07g2443 . 1 209 Glutathione S-transferase Gene Family AT1G19570 62.9 1.2e-76 283.9
Sed06g1393 . 60 267 Glutathione S-transferase Gene Family AT1G19570 59.3 7.0e-72 268.1
Sed07g2442 . 226 435 Glutathione S-transferase Gene Family AT1G75270 73.5 1.8e-88 323.2
Sed07g2441 . 1 211 Glutathione S-transferase Gene Family AT1G75270 70.3 1.0e-83 307.4
Sed04g2794 . 1 211 Glutathione S-transferase Gene Family AT1G75270 66.0 2.2e-81 299.7
Sed07g2443 . 1 206 Glutathione S-transferase Gene Family AT1G75270 67.1 1.4e-80 297.0
Sed06g1393 . 60 267 Glutathione S-transferase Gene Family AT1G75270 60.3 1.2e-71 267.3
Sed07g2444 . 1 158 Glutathione S-transferase Gene Family AT1G75270 50.2 1.2e-50 197.6
Sed06g1393 . 53 269 Glutathione S-transferase Gene Family AT5G16710 77.9 3.7e-99 359.0
Sed07g2441 . 3 210 Glutathione S-transferase Gene Family AT5G16710 60.6 1.2e-73 274.2
Sed07g2442 . 3 210 Glutathione S-transferase Gene Family AT5G16710 58.2 9.4e-71 264.6
Sed04g2794 . 3 210 Glutathione S-transferase Gene Family AT5G16710 57.7 1.6e-70 263.8
Sed07g2443 . 3 206 Glutathione S-transferase Gene Family AT5G16710 54.9 8.2e-67 251.5
Sed12g1477 . 1 267 Glutathione S-transferase Gene Family AT1G77290 68.9 3.8e-107 385.6