Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g3068 | ATGGCTACACAACTACCTCCTTCATTAGACGCCACCGCCGAGCAACCCCCTCTCTTCGACGGAACCACGAGGCTGTATTCGGCTTATTTATGCCCATTTTCCCAACGTCTGTGGATCGCCCGGAATTACAAGGGGCTACGGGATATAATCAAGCTAGTTCCTCTCGACCTTTATAATAGGCCTGATTGGTACAAGAACGTATACCCTACAAACAAGGTTCCAACTCTAGAACACAATGGGAAAATTATTGGAGCAAGCCTTGATCTACTCAAATATATTGATACCAACTTTGAAGGGCCTTCTCTTCTCCCAGATGATCCTCTTAAAAGAGATTATGCCAAAGAGTTGCTATCGTACAGCGATACTTGTATCGGTGGATGTATCGGTGCAATAGTTGCTTCGTTTAAAGGCGACACCGCAAAGGAAGTAGCAGGTACTCATTTTGATTATTTGGAAAATGCTCTGCATAAATTTGATGGCCCCTTCTTCCTTGGAGATCAAATCAGTCAAGTGGATGTAGCTTATATTCCATTTATTGAAAGGTACCAAATTTTCTTATGGGAGCTTTCCAAGATTGATATCACTCAAGGAAGGCCTAAACTAGCTGTATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAAGAAACCAAATATGATCCTAAGGCCAACGTTGAACATTTCAAGAAGCGCTACATGCTTTGA | 705 | 42.27 | MATQLPPSLDATAEQPPLFDGTTRLYSAYLCPFSQRLWIARNYKGLRDIIKLVPLDLYNRPDWYKNVYPTNKVPTLEHNGKIIGASLDLLKYIDTNFEGPSLLPDDPLKRDYAKELLSYSDTCIGGCIGAIVASFKGDTAKEVAGTHFDYLENALHKFDGPFFLGDQISQVDVAYIPFIERYQIFLWELSKIDITQGRPKLAVWIEEFNKIDAYKETKYDPKANVEHFKKRYML | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 47423015 | 47423719 | - | Sed0021605.1 | Sed03g3068 | 708555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g3068 | 234 | PRINTS | Omega-class glutathione S-transferase signature | 162 | 181 | IPR005442 | GO:0004364(InterPro)|GO:0005737(InterPro) | |
Sed03g3068 | 234 | PRINTS | Omega-class glutathione S-transferase signature | 97 | 111 | IPR005442 | GO:0004364(InterPro)|GO:0005737(InterPro) | |
Sed03g3068 | 234 | PRINTS | Omega-class glutathione S-transferase signature | 21 | 36 | IPR005442 | GO:0004364(InterPro)|GO:0005737(InterPro) | |
Sed03g3068 | 234 | Gene3D | Glutaredoxin | 1 | 98 | - | - | |
Sed03g3068 | 234 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 21 | 101 | IPR004045 | - | |
Sed03g3068 | 234 | Pfam | Glutathione S-transferase, N-terminal domain | 25 | 100 | IPR004045 | - | |
Sed03g3068 | 234 | SFLD | Glutathione Transferase (cytosolic) | 24 | 208 | IPR040079 | - | |
Sed03g3068 | 234 | Gene3D | - | 99 | 234 | - | - | |
Sed03g3068 | 234 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 106 | 233 | IPR010987 | - | |
Sed03g3068 | 234 | SUPERFAMILY | GST C-terminal domain-like | 97 | 231 | IPR036282 | - | |
Sed03g3068 | 234 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 98 | - | - | |
Sed03g3068 | 234 | SFLD | Main (cytGST) | 24 | 208 | - | - | |
Sed03g3068 | 234 | Pfam | Glutathione S-transferase, C-terminal domain | 145 | 206 | - | - | |
Sed03g3068 | 234 | SUPERFAMILY | Thioredoxin-like | 16 | 102 | IPR036249 | - | |
Sed03g3068 | 234 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 3 | 233 | IPR044629 | GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0720 | Sed-Chr2:45021248 | Sed03g3068 | Sed-Chr3:47423015 | 3.60E-117 | dispersed | |
Sed02g0721 | Sed-Chr2:45021248 | Sed03g3068 | Sed-Chr3:47423015 | 3.60E-117 | dispersed | |
Sed02g0722 | Sed-Chr2:45032798 | Sed03g3068 | Sed-Chr3:47423015 | 2.90E-108 | dispersed | |
Sed03g3068 | Sed-Chr3:47423015 | Sed04g2736 | Sed-Chr4:39574289 | 5.50E-70 | dispersed | |
Sed03g3068 | Sed-Chr3:47423015 | Sed04g1311 | Sed-Chr4:27396333 | 2.70E-93 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g3068 | K00799 | - | csv:101211241 | 347.821 |