Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3083 ATGATGAGGCGCTTTGGTGGTTCCATGGCCTGCCACCATCTTCACAGTGCGTCTCATATTTGCAGAAACTTTTTGGGATTATTTTTGACATCCAAATCTTCTTCTTCTTCTTCTTCGAGGACACAGTCTCTTGTTCACCATTCTTTCCCGCCTTTCTCCGTTCTGCATTCCCCGAAGGGTTATTGTAGTTCATCCGGAAGTATAAATGCTGCCACTACTGTGGATAGCAATGCACCTTTTCATGGTACTTCTGCATCTTCTAAAAGCCAGCCAATGCAGCAGTTCCAAGATTCGTTATCGAATTCGCTCACCTGCAAAGAAGATATTGGAATTGACTGTCCTTCAGATGCTAGAGTCATGCTCATTGATGGCACGTCAATCATTTATAGAGCATATTACAAACTTCTGGCAAAGCTGCACCATGGCTATTTATCACATGCGGATGGCAATGGAGATTGGGTTCTAACAATATTTACTGCCTTGTCACTTATTGTTGATGTTCTGGAGTTCGTGCCTTCTCATGTGGCGGTTGTGTTCGACCATGATGGACATCCATATGGAACTAGTAATTCATCGAATGTAAATTTCATGGCAAAAGGATCCACCTTTCGTCATACACGTTATCCTGCATATAAGAGTAACAGGCCACCTACACCTGATACCATAGTCCAGGGGCTCCAATACTTGAAGGCATCCATAAAGTCTCTGTCCGTACAAGTGATTGAGGTACCTGGAGTGGAAGCCGATGATGTAATTGGCACATTGGCTTTGAGAAGTGTTACTGCTGGGTGCAAGGTTCGCGTTGTCTCTCCTGATAAAGATTTCTTCCAGATTTTATCTCCTTCATTACGTCTTTTGCGAATAGCTCCACGTGGTTTTGAGATGGTTTCTTTTGGGTTGGAGGATTTTGCTGAAAAATATGGAGGGCTGGAACCTTCTCAGTTTGTTGATGTGGTCTCTCTAGTCGGTGACAAATCTGATAATATTCCAGGAGTTGATGGAATTGGAAATGTGAATGCGGTGCAACTTATAACCAGATTTGGCTCATTAGAAAATTTGTTGCAACATGTTGATCAAGTAGAAGATGAACGTATTCAGAAGATGTTGGTAACAAATGCTGAGCAAGCTCTCTTGAGCAAGGACCTGGCAATCTTGCGATCTGATCTTCCACCTTATATGGTACCATTTACCATCAGAGATCTTTTATTCAAAAAACCAGAGGATAATGGGGAGAAATTCACAAGCCTGTTAACAGCTATGGGTGCATATGCAGAAGAAGTCTCAGCTGATCCAATCATCAGGAGAGTACACTACTTATGGAAGAAGCTTGAAAAAAAATTAAAAAAATAG 1350 42.0 MMRRFGGSMACHHLHSASHICRNFLGLFLTSKSSSSSSSRTQSLVHHSFPPFSVLHSPKGYCSSSGSINAATTVDSNAPFHGTSASSKSQPMQQFQDSLSNSLTCKEDIGIDCPSDARVMLIDGTSIIYRAYYKLLAKLHHGYLSHADGNGDWVLTIFTALSLIVDVLEFVPSHVAVVFDHDGHPYGTSNSSNVNFMAKGSTFRHTRYPAYKSNRPPTPDTIVQGLQYLKASIKSLSVQVIEVPGVEADDVIGTLALRSVTAGCKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMVSFGLEDFAEKYGGLEPSQFVDVVSLVGDKSDNIPGVDGIGNVNAVQLITRFGSLENLLQHVDQVEDERIQKMLVTNAEQALLSKDLAILRSDLPPYMVPFTIRDLLFKKPEDNGEKFTSLLTAMGAYAEEVSADPIIRRVHYLWKKLEKKLKK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47539174 47567424 - Sed0016017.1 Sed03g3083 708570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3083 449 FunFam DNA polymerase I 312 400 - -
Sed03g3083 449 Gene3D - 111 308 - -
Sed03g3083 449 Gene3D - 312 400 - -
Sed03g3083 449 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 196 308 IPR020046 GO:0003677(InterPro)
Sed03g3083 449 CDD PIN_53EXO 121 305 - -
Sed03g3083 449 Pfam 5'-3' exonuclease, C-terminal SAM fold 311 407 IPR020045 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed03g3083 449 CDD H3TH_53EXO 312 385 IPR020045 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed03g3083 449 SMART 53exo3 117 404 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Sed03g3083 449 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 309 392 IPR036279 -
Sed03g3083 449 FunFam 5'-3' exonuclease family protein 109 308 - -
Sed03g3083 449 SUPERFAMILY PIN domain-like 117 308 IPR029060 -
Sed03g3083 449 SMART HhH_4 312 347 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed03g3083 449 PANTHER FLAP ENDONUCLEASE XNI 119 446 IPR038969 GO:0017108(InterPro)|GO:0033567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3083 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002965 1 6 1 1 1 3 1 2 3 1 1 1 1 1 1 2 2 1 1 3 1 1 0 2 4 3 1 1 3 0 50