Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3086 ATGTGGATGATGAATTTAGTTAGTGTTATATTGTGTGTGGGGTTGAGCTTCATATTGAGGTTGGGAGGTGCACATGGGTTGAGTATGGGGTATTACTTGATGAGCTGTCCGTTCGTGGATCCGATCGTCAAGAACACCGTGAACCGAGCTCTTGCAAACGATCCCACGTTGGCTGCTGCACTCATTCGAATGCATTTTCACGATTGCTTTGTAGAGGGGTGCGATGGATCGGTGTTGATTGACTCGACAGAAGACAACACTGCAGAAAAGGACTCTCCTGCAAACTTGAGCTTGCGAGGTTACGAGGTGATCGATGAGATTAAGGAGCAGCTAGAGAACCAATGCCCTGGTGTTGTTTCTTGTGCTGACATTATCGCTATGGCGGCAAGAGATGCTGTCTTTTGGGCTGGAGGCCCATTTTATGAGATACCAAAGGGAAGGAAGGACGGGAGCCGATCAAGAATCGAAGACACTGCCAATTTGCCTTCGCCTTTCTTCAATGCATCTCAACTTATCAATGCATTCGCTCGACGTGGCTTTACGGTTCAACAAATGGTCGCGCTTTCAGGGGCTCATACGTTGGGAGTGGCAAGATGCATATCCTTCAAAAGAAGACTTGACGGCACCGATCCCTTTTTGAGTTCCAACTTTGGGAACACATTGGCAAGAACATGCAGCAACGGCGACAACGCCATACAAAGATTTGACGCCACACCCGACAGCTTCGACAACGTCTACTACAACGCCCTGTCGAGAGGCGCAGGGGTTCTGTTTTCCGACCAGACCTTGTACGCTAGCCCGCGTACAAGGGGCATCGTAACCGCCTATGCCATGAACCCGGCACTGTTCTTCTTGGACTTTCAGCAGGCCTTCATCAAAATGGGATTGCTTGATGTCAAGGAAAGTTTTAGAGGCCAAGTTCGCCGCAACTGTCGTAGAGTTAATTGA 948 49.16 MWMMNLVSVILCVGLSFILRLGGAHGLSMGYYLMSCPFVDPIVKNTVNRALANDPTLAAALIRMHFHDCFVEGCDGSVLIDSTEDNTAEKDSPANLSLRGYEVIDEIKEQLENQCPGVVSCADIIAMAARDAVFWAGGPFYEIPKGRKDGSRSRIEDTANLPSPFFNASQLINAFARRGFTVQQMVALSGAHTLGVARCISFKRRLDGTDPFLSSNFGNTLARTCSNGDNAIQRFDATPDSFDNVYYNALSRGAGVLFSDQTLYASPRTRGIVTAYAMNPALFFLDFQQAFIKMGLLDVKESFRGQVRRNCRRVN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47584931 47587058 + Sed0015370.1 Sed03g3086 708573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3086 315 CDD secretory_peroxidase 26 314 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed03g3086 315 ProSiteProfiles Plant heme peroxidase family profile. 26 315 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 Gene3D - 30 315 - -
Sed03g3086 315 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Sed03g3086 315 Gene3D Peroxidase, domain 2 162 294 - -
Sed03g3086 315 FunFam Peroxidase 30 165 - -
Sed03g3086 315 SUPERFAMILY Heme-dependent peroxidases 26 315 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 Pfam Peroxidase 43 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PANTHER PEROXIDASE 25-RELATED 15 311 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g3086 315 FunFam Peroxidase 162 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g3086 Sed-Chr3:47584931 Sed13g0179 Sed-Chr13:1167711 7.20E-73 dispersed
Sed03g3086 Sed-Chr3:47584931 Sed14g1212 Sed-Chr14:21362100 1.90E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3086 K00430 - csv:101202852 553.132