Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3111 ATGGCTTCTGGTGGTGATTTCTTGCCACCCTTGGTTATGGTGGCTGTCCAATTCCTCTATGCAGGCTTGAATATCACATCGAAGTTAGCCATGGAGTTCGGGATGAATCCACTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCCTATTGGTTTGAAAGAAAAGAGAGGCCCAAGATCACAAATCCTATCTTGTTTCAGATTCTACTATGTTCCTTAACTGGGGCAACAGCAAACCAAGTGTTTTTCTATGTAGGGTTAAAATATTCATCCCCCACCATCTCATGTGCATTGACCAATGTCCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTTGGGATGAAAACAAGTCCAGGTGCAGCGAAGGTGATAGGGACTGTCGTGTGCGTTGGAGGGGCAATGTTGCTGTCATTCTACCGCGGACAAACCATTGAGCTGGGTGAATCTGGGATTCATTGGAAGTATGCTGAGATGATGAGGGGGGAAAGTTCCAGCAGCCAAGGCAGCAGCATCTGGGGCTCTCTCTGCTTGATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCGAACGTGAATTCTCAATTCCCAGCACCCTACACAAGCACATTTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATCGCCATTGGCGTTGAGCACAAGACTGTCGCAGCTTGGTCATTGAAAATCCCGATCAGGCTTGTTGGTGCGCTCTATGCGGGAGTGGCATGCTCTGGGGTTGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAATGGTCCTCTGTATGCCTCAGTTTTCAGCCCCTTATTGCTGGTTATCGTGGCTATTTTCAGCTGGGCCTTCTTTCAAGAACAATTATATGTAGGAACTGTTGTAGGATCATTGCTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTGCAACAAGATGTTGAAATGGCGGCAGTAGTAGCAGAGGCAAAGCTAGATGACTTGGAAGAACAGTCCTATGAGGTTTCAAATGCCAATATTCTCCATAATAAGTAA 1104 46.47 MASGGDFLPPLVMVAVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKERPKITNPILFQILLCSLTGATANQVFFYVGLKYSSPTISCALTNVLPAATFVLAVLFRQESVGMKTSPGAAKVIGTVVCVGGAMLLSFYRGQTIELGESGIHWKYAEMMRGESSSSQGSSIWGSLCLIISSVAWAAWFVIQANVNSQFPAPYTSTFLMTFMATIQCGAIAIGVEHKTVAAWSLKIPIRLVGALYAGVACSGVAFCLTSWSIQKNGPLYASVFSPLLLVIVAIFSWAFFQEQLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQDVEMAAVVAEAKLDDLEEQSYEVSNANILHNK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47810990 47812672 - Sed0020718.1 Sed03g3111 708598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3111 367 PANTHER WAT1-RELATED PROTEIN 11 339 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g3111 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Sed03g3111 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
Sed03g3111 367 Coils Coil 334 354 - -
Sed03g3111 367 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Sed03g3111 367 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3767 Sed-Chr1:66803663 Sed03g3111 Sed-Chr3:47810990 9.20E-56 dispersed
Sed03g3111 Sed-Chr3:47810990 Sed04g2680 Sed-Chr4:39178975 1.40E-67 dispersed
Sed03g2950 Sed-Chr3:46460938 Sed03g3111 Sed-Chr3:47810990 5.80E-111 transposed
Sed04g4020 Sed-Chr4:47865444 Sed03g3111 Sed-Chr3:47810990 3.80E-133 transposed
Sed14g0046 Sed-Chr14:593769 Sed03g3111 Sed-Chr3:47810990 5.40E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3111 - - - 0.0