Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g3114 | ATGGCAACAGACCAGGGTGCGCTTACCACTGAGCAGGTTCTTACAAGGGACATTCCATGGGAGACGTACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCACAGCTGTTGGATGATGATGGTCCAGCTTATGTTCGAGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACAGTGGAATATGTTCTGGCATTAATTGATGAAATGCTTACTGCAAACCCGAAAAGAGCAAGACTGTTCCATGATCATTCTCTTGCAAATGAAGATGCTTATGAGCCTTTCCTAAGATTGCTTTGGAAGGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTTATAGTGAGTGCTAGAAAACAAATTCAAGAAGGCAGTTTTGAAAATGGTGATGCCTCAAACTCCAAGAAGAAAATTACCACCATTGATGATGTCTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCGACTCTGCTGAAGGAACCAAAGGTCAGATCGTCCTTCGTCCAGGCAGATGGAGTGAAATTGCTCGTTCCTTTGATTTCTCCTGCATCGTCCCAACAATCTATTCAGATTCTATATGAAACTTGCCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATCGAATTCTTGGCCACTTCTAAAACCCTTCCTAGACTTATTGATGTAATCAAGAGCTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTGACCTTGAGGAACTTACTCCACAAGGGGACGTTTGGAGCTCAAATGGTGGGTCTCGGACTACCACAAATTGTTCAAAGCTTGAAATCCCAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGATAATATCAAGAAACTAAGTTCATTTGACAAGTATAAGCAAGAAGTCCTTCTAGGCCAACTTGACTGGTCTCCTATGCACAAAGATGTAAATTTCTGGCGTGAAAATATTACAACCTTTGAAGAGAACGACTTCAAGATATTGAGGGTCCTTATGACCATTCTGGACACTTCGAGTGACCCAAGGGCTCTGGCAGTGGCTTGCTTTGATCTTTCACAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGGGAATGCTGAAGTTACCAAATACTCCCTCCTCTGCATTCAAAGGCTCTTCCTAGGTGCCAAGTATGCAAGCTTTCTTCAGGCTTAA | 1365 | 42.56 | MATDQGALTTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLANEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARKQIQEGSFENGDASNSKKKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQADGVKLLVPLISPASSQQSIQILYETCLCVWLLSYYEPAIEFLATSKTLPRLIDVIKSSTKEKVVRVVILTLRNLLHKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGQLDWSPMHKDVNFWRENITTFEENDFKILRVLMTILDTSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHGNAEVTKYSLLCIQRLFLGAKYASFLQA | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 47868056 | 47882529 | - | Sed0022579.1 | Sed03g3114 | 708601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g3114 | 454 | CDD | VATPase_H | 4 | 448 | - | - | |
Sed03g3114 | 454 | Pfam | V-ATPase subunit H | 331 | 443 | IPR011987 | GO:0000221(InterPro)|GO:1902600(InterPro) | |
Sed03g3114 | 454 | PIRSF | V-ATP_synth_H | 1 | 453 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed03g3114 | 454 | Gene3D | - | 7 | 333 | IPR011989 | - | |
Sed03g3114 | 454 | SUPERFAMILY | ARM repeat | 10 | 444 | IPR016024 | - | |
Sed03g3114 | 454 | Gene3D | - | 345 | 446 | IPR038497 | - | |
Sed03g3114 | 454 | FunFam | V-type proton ATPase subunit H | 345 | 446 | - | - | |
Sed03g3114 | 454 | Pfam | V-ATPase subunit H | 9 | 325 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed03g3114 | 454 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT H | 3 | 453 | IPR004908 | GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Sed03g3114 | 454 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 400 | 407 | IPR018506 | GO:0020037(InterPro) | |
Sed03g3114 | 454 | SMART | arm_5 | 198 | 242 | IPR000225 | GO:0005515(InterPro) | |
Sed03g3114 | 454 | SMART | arm_5 | 243 | 284 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2360 | Sed-Chr3:19106031 | Sed03g3114 | Sed-Chr3:47868056 | 6.90E-54 | dispersed | |
Sed03g3114 | Sed-Chr3:47868056 | Sed14g0260 | Sed-Chr14:2757272 | 1.00E-242 | dispersed | |
Sed03g3114 | Sed-Chr3:47868056 | Sed03g3115 | Sed-Chr3:47868056 | 3.60E-259 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g3114 | K02144 | - | csv:101217015 | 832.017 |