Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g3114 ATGGCAACAGACCAGGGTGCGCTTACCACTGAGCAGGTTCTTACAAGGGACATTCCATGGGAGACGTACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCACAGCTGTTGGATGATGATGGTCCAGCTTATGTTCGAGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACAGTGGAATATGTTCTGGCATTAATTGATGAAATGCTTACTGCAAACCCGAAAAGAGCAAGACTGTTCCATGATCATTCTCTTGCAAATGAAGATGCTTATGAGCCTTTCCTAAGATTGCTTTGGAAGGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTTATAGTGAGTGCTAGAAAACAAATTCAAGAAGGCAGTTTTGAAAATGGTGATGCCTCAAACTCCAAGAAGAAAATTACCACCATTGATGATGTCTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCGACTCTGCTGAAGGAACCAAAGGTCAGATCGTCCTTCGTCCAGGCAGATGGAGTGAAATTGCTCGTTCCTTTGATTTCTCCTGCATCGTCCCAACAATCTATTCAGATTCTATATGAAACTTGCCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATCGAATTCTTGGCCACTTCTAAAACCCTTCCTAGACTTATTGATGTAATCAAGAGCTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTGACCTTGAGGAACTTACTCCACAAGGGGACGTTTGGAGCTCAAATGGTGGGTCTCGGACTACCACAAATTGTTCAAAGCTTGAAATCCCAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGATAATATCAAGAAACTAAGTTCATTTGACAAGTATAAGCAAGAAGTCCTTCTAGGCCAACTTGACTGGTCTCCTATGCACAAAGATGTAAATTTCTGGCGTGAAAATATTACAACCTTTGAAGAGAACGACTTCAAGATATTGAGGGTCCTTATGACCATTCTGGACACTTCGAGTGACCCAAGGGCTCTGGCAGTGGCTTGCTTTGATCTTTCACAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGGGAATGCTGAAGTTACCAAATACTCCCTCCTCTGCATTCAAAGGCTCTTCCTAGGTGCCAAGTATGCAAGCTTTCTTCAGGCTTAA 1365 42.56 MATDQGALTTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLANEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARKQIQEGSFENGDASNSKKKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQADGVKLLVPLISPASSQQSIQILYETCLCVWLLSYYEPAIEFLATSKTLPRLIDVIKSSTKEKVVRVVILTLRNLLHKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGQLDWSPMHKDVNFWRENITTFEENDFKILRVLMTILDTSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHGNAEVTKYSLLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47868056 47882529 - Sed0022579.1 Sed03g3114 708601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g3114 454 CDD VATPase_H 4 448 - -
Sed03g3114 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Sed03g3114 454 PIRSF V-ATP_synth_H 1 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g3114 454 Gene3D - 7 333 IPR011989 -
Sed03g3114 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Sed03g3114 454 Gene3D - 345 446 IPR038497 -
Sed03g3114 454 FunFam V-type proton ATPase subunit H 345 446 - -
Sed03g3114 454 Pfam V-ATPase subunit H 9 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g3114 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 3 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g3114 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Sed03g3114 454 SMART arm_5 198 242 IPR000225 GO:0005515(InterPro)
Sed03g3114 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2360 Sed-Chr3:19106031 Sed03g3114 Sed-Chr3:47868056 6.90E-54 dispersed
Sed03g3114 Sed-Chr3:47868056 Sed14g0260 Sed-Chr14:2757272 1.00E-242 dispersed
Sed03g3114 Sed-Chr3:47868056 Sed03g3115 Sed-Chr3:47868056 3.60E-259 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g3114 K02144 - csv:101217015 832.017