Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0011 ATGGAAAACCCCATATTTGTTGTCATGATGAGCTTCACTGTTTTTGCCCAAATCATTTGTTCGTCCCCAGTGGCTGATCCTGAACAAGTGGTTGAACAAGTTGTGGCGAGCATAAACAATGCAACCAGAAGAAGAAGCCTGGGGTTTCTGTCCTGTGGAACGGGGAACCCCATAGACGACTGTTGGAGGTGCGACCCCAAGTGGGAGAAGAACCGAAAGCGGCTTGCGGAGTGCGGCATTGGGTTCGGAAAGGGAGCCATAGGCGGCAAAAACGGGAGATACTACGTAGTCACAGACCCCTCCGACAACGACGTGGTGAACCCAAAACCAGGCACCCTACGCCACGCCGTGATCCAAAAGGACCCCTTATGGATCCTCTTCAAACGCGACATGGTCATCAAACTCAAAGCAGAGCTCATCATGAACTCTTTCAAAACCATCGACGGCCGCGGGGTGTCCGTCCATATCGCGGGCGGGCCTTGCATTACCATCCAGTTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAACAAGGTGGGAACACCAACGTGCGAGATTCCCCCGACCATTACGGTTGGAGGACTCTGTCCGACGGGGACGGGGTTTCCATTTTCGGGGGCACCCATGTGTGGATCGACCATTGTTCTTTGTCCAATTGCCGTGATGGGTTGATCGATGCCATTCATGGGTCTACGGCCATTACTATTTCCAACAATTACATGACCCATCATAACAAAGTTATGCTGTTGGGACATAGTGACTCCTACACACAAGACAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGGGAGGGCCTTGTCCAAAGAATGCCACGATGCCGGCATGGGTATTTCCATGTGGTCAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCCACTATTAATAGCCAAGGCAACAGATACCTTGCTCCAGATAACCGAGATAGAAAAGAGGTCACCAAGCGTGAGGATGCACCACAAAGTAAATGGAAGACTTGGAATTGGCGATCCAATGGGGATTTGATGTTGAATGGAGCATTCTTCACGAGGTCGGGTGCCGGATCTTCATCTACCTATGCAAGAGCATCCAGCTTGAGTGCCAAGTCATCGTCCTTGGTGAGTTCGATGACGGCAGGAGCGGGGGTGCTGCGGTGCCGAAAGGGTTCCCGGTGCTAG 1215 50.45 MENPIFVVMMSFTVFAQIICSSPVADPEQVVEQVVASINNATRRRSLGFLSCGTGNPIDDCWRCDPKWEKNRKRLAECGIGFGKGAIGGKNGRYYVVTDPSDNDVVNPKPGTLRHAVIQKDPLWILFKRDMVIKLKAELIMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTNVRDSPDHYGWRTLSDGDGVSIFGGTHVWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKTWNWRSNGDLMLNGAFFTRSGAGSSSTYARASSLSAKSSSLVSSMTAGAGVLRCRKGSRC 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 77612 79328 - Sed0020695.1 Sed04g0011 708614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0011 404 FunFam Pectate lyase 55 397 - -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Sed04g0011 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Sed04g0011 404 PANTHER PECTATE LYASE 18-RELATED 10 401 IPR045032 GO:0030570(InterPro)
Sed04g0011 404 Gene3D - 55 397 IPR012334 -
Sed04g0011 404 SMART amb_all 130 327 IPR002022 -
Sed04g0011 404 Pfam Pectate lyase 165 319 IPR002022 -
Sed04g0011 404 SUPERFAMILY Pectin lyase-like 42 398 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1503 Sed-Chr1:10901077 Sed04g0011 Sed-Chr4:77612 3.20E-120 dispersed
Sed03g2641 Sed-Chr3:42361412 Sed04g0011 Sed-Chr4:77612 1.60E-213 dispersed
Sed04g0011 Sed-Chr4:77612 Sed11g1880 Sed-Chr11:33382568 2.00E-181 dispersed
Sed04g0011 Sed-Chr4:77612 Sed02g1468 Sed-Chr2:50689600 4.60E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0011 K01728 - csv:101208076 700.664