Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0013 ATGCTGCAGATTCTTAAGGGTGGTCTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACACTTCTAGTTAAGGCTGCCACATTTCCTTTGACCAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCACAAGTAAAGGCTGTTCAGCAACGTTATGCTGGGGATCAGGAGAGGATTCAAATTGAAACTGCTCGACTGTACAAATTAGCTGGCATAAACCCATTAGCAGGATGCCTACCAACATTGGCTACAATTCCTGTATGGATTGGACTATACCGAGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACTGAAGGTTTTTTCTGGATACCCTCTCTGGCCGGTCCAACTACAATTGCTTCTCGACAAAATGGGAGTGGTATCTCTTGGCTCTTTCCGTTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTCGCATATCTTGTCTTGCCCGTGTTGCTGGTTGTCTCGCAGTACATCTCTGTTCAGATTATGCAATCGACGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGTCATAACAAAGTTCCTACCGTTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTTTAAGTCTTTATTGGCTTACCAATAACATCTTAAGCACAGCTCAGCAAGCATGGCTTCAAAAGCTAGGTGGTGCAAAAGCCCCGGACAAACAGTTAATCGATGAAATCGTGAAACAAGAACAAGCCCAAATCCAGAGCCAAGTGCCCGAGATAAACTTGGTCTCAATGGGTACAGTAGCCAGACAAGAAGAGAAACTTACAGTAGAAGGGCTAAAACCCGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAAGATAAGACAGCAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCCAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGTGCAACTATTAGAGTTGTTGTCAATGGCAGTCTTTCTAGACAGGATGTGAAGGATGATGAAAACCCCACGTCCACATCTACTATGCACGGAACCGATCTGGACAATGAGGTCGGCGGTTCGGGTGAACATCTGCCAAGTAAAACTCAGGACGAGGGAGTAGTCAAGACATACACTGGAGTGGCCAATGATGACAAACTAAATAGAGAAGAACAAAGAGAGTGA 1200 43.92 MLQILKGGLSTLHVPYAYGFAIILLTLLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQIETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSTQNNDPNMKSSQVITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKAPDKQLIDEIVKQEQAQIQSQVPEINLVSMGTVARQEEKLTVEGLKPGERFKQIKEQEAKIRQQREEEKRKAEEAAKLESQTINDSDKSATIRVVVNGSLSRQDVKDDENPTSTSTMHGTDLDNEVGGSGEHLPSKTQDEGVVKTYTGVANDDKLNREEQRE 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 85787 90105 - Sed0000031.2 Sed04g0013 708616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0013 399 MobiDBLite consensus disorder prediction 296 318 - -
Sed04g0013 399 NCBIfam membrane protein insertase YidC 18 232 IPR028055 -
Sed04g0013 399 CDD 5TM_YidC_Alb3 19 232 IPR047196 -
Sed04g0013 399 MobiDBLite consensus disorder prediction 337 399 - -
Sed04g0013 399 Pfam 60Kd inner membrane protein 18 232 IPR028055 -
Sed04g0013 399 PANTHER OXA1 5 307 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Sed04g0013 399 Coils Coil 288 319 - -
Sed04g0013 399 MobiDBLite consensus disorder prediction 296 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0013 Sed-Chr4:85787 Sed13g1378 Sed-Chr13:19246845 4.20E-110 dispersed
Sed04g0012 Sed-Chr4:85787 Sed04g0013 Sed-Chr4:85787 3.50E-218 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0013 K03217 - csv:101205346 618.616