Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0021 ATGGAAAATGGCTTTTCTTCTACTCGAAGCGATGTGTTTCCTGTTGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTGAAAAAGTGCTCGTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAGGATAGATACGGCATTGTAATCAGTGACGTAAACATGCCCGATATGGATAGTTTTGAACTCCTTGAGCATGTAGGATTGGAAATGGACCTGCCAGTTATCCTGATGTCGGTGGGCGGAGAAACAAGCAGAGTAATGAAAGGGGTTCCACGCGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAACGGCTTAAGAATATATGGCAGCACGTTTTTCGAAAGAAGAGATATGGAAGGCCATGA 426 44.6 MENGFSSTRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDRYGIVISDVNMPDMDSFELLEHVGLEMDLPVILMSVGGETSRVMKGVPRGACDYLLKPIRMKRLKNIWQHVFRKKRYGRP 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 115763 117324 + Sed0005457.1 Sed04g0021 708624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0021 141 SUPERFAMILY CheY-like 16 138 IPR011006 -
Sed04g0021 141 Gene3D - 17 141 - -
Sed04g0021 141 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Sed04g0021 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 137 IPR045279 GO:0009736(InterPro)
Sed04g0021 141 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160(InterPro)
Sed04g0021 141 CDD REC_typeB_ARR-like 19 133 - -
Sed04g0021 141 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0021 Sed-Chr4:115763 Sed12g0794 Sed-Chr12:4870388 7.00E-44 dispersed
Sed04g0021 Sed-Chr4:115763 Sed04g0022 Sed-Chr4:115763 2.40E-76 tandem
Sed03g2639 Sed-Chr3:42303883 Sed04g0021 Sed-Chr4:115763 1.90E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37994 PF00072 Response_reg 4.30E-21 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0021 K14491 - csv:101204370 240.35