Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0022 | ATGGAAAATGGCTTTTCTTCTACTCGAAGCGATGTGTTTCCTGTTGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTGAAAAAGTGCTCGTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAGGATAGATACGGCATTGTAATCAGTGACGTAAACATGCCCGATATGGATAGTTTTGAACTCCTTGAGCATGTAGGATTGGAAATGGACCTGCCAGTTATCCGTCAGTGCTATTCATTGATGTCGGTGGGCGGAGAAACAAGCAGAGTAATGAAAGGGGTTCCACGCGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAACGGCTTAAGAATATATGGCAGCACGTTTTTCGAAAGAAGAGATATGGAAGGCCATGA | 441 | 44.44 | MENGFSSTRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDRYGIVISDVNMPDMDSFELLEHVGLEMDLPVIRQCYSLMSVGGETSRVMKGVPRGACDYLLKPIRMKRLKNIWQHVFRKKRYGRP | 146 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 115763 | 117324 | + | Sed0005457.2 | Sed04g0022 | 708625 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0022 | 146 | ProSiteProfiles | Response regulatory domain profile. | 18 | 138 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0022 | 146 | SUPERFAMILY | CheY-like | 16 | 143 | IPR011006 | - | |
Sed04g0022 | 146 | SMART | REC_2 | 17 | 134 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0022 | 146 | Pfam | Response regulator receiver domain | 19 | 132 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0022 | 146 | Gene3D | - | 17 | 146 | - | - | |
Sed04g0022 | 146 | CDD | REC_typeB_ARR-like | 19 | 138 | - | - | |
Sed04g0022 | 146 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 142 | IPR045279 | GO:0009736(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0022 | Sed-Chr4:115763 | Sed12g0794 | Sed-Chr12:4870388 | 5.20E-42 | dispersed | |
Sed04g0021 | Sed-Chr4:115763 | Sed04g0022 | Sed-Chr4:115763 | 2.40E-76 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37995 | PF00072 | Response_reg | 2.30E-17 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0022 | K14491 | - | csv:101204370 | 234.187 |