Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0022 ATGGAAAATGGCTTTTCTTCTACTCGAAGCGATGTGTTTCCTGTTGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTGAAAAAGTGCTCGTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAGGATAGATACGGCATTGTAATCAGTGACGTAAACATGCCCGATATGGATAGTTTTGAACTCCTTGAGCATGTAGGATTGGAAATGGACCTGCCAGTTATCCGTCAGTGCTATTCATTGATGTCGGTGGGCGGAGAAACAAGCAGAGTAATGAAAGGGGTTCCACGCGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAACGGCTTAAGAATATATGGCAGCACGTTTTTCGAAAGAAGAGATATGGAAGGCCATGA 441 44.44 MENGFSSTRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDRYGIVISDVNMPDMDSFELLEHVGLEMDLPVIRQCYSLMSVGGETSRVMKGVPRGACDYLLKPIRMKRLKNIWQHVFRKKRYGRP 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 115763 117324 + Sed0005457.2 Sed04g0022 708625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0022 146 ProSiteProfiles Response regulatory domain profile. 18 138 IPR001789 GO:0000160(InterPro)
Sed04g0022 146 SUPERFAMILY CheY-like 16 143 IPR011006 -
Sed04g0022 146 SMART REC_2 17 134 IPR001789 GO:0000160(InterPro)
Sed04g0022 146 Pfam Response regulator receiver domain 19 132 IPR001789 GO:0000160(InterPro)
Sed04g0022 146 Gene3D - 17 146 - -
Sed04g0022 146 CDD REC_typeB_ARR-like 19 138 - -
Sed04g0022 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 142 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0022 Sed-Chr4:115763 Sed12g0794 Sed-Chr12:4870388 5.20E-42 dispersed
Sed04g0021 Sed-Chr4:115763 Sed04g0022 Sed-Chr4:115763 2.40E-76 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37995 PF00072 Response_reg 2.30E-17 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0022 K14491 - csv:101204370 234.187