Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0032 | ATGGCGTCTGGGCGACATGGAGGCTACCCCGAGAATGAGTTCAGGGACCGGGAGACCAATTTTCACGTTTCCAGGAGGTCGTTTGGCAGCGCCAGGCAGCAATTTGAAAGAGTTAAGGTCAGCAACGACGATCGTATTGCCAGAGACAATGTTAGGGTTAGGGATCGGGAAGTGAAGGAACACGCGGTCGTCAATGGTAATTTTCATTTGTCTTCTTGCAATCTTGATTCGGGTGAAAACATTGATGGTTCAATGCGAATTAGGGTTTCTAGTACCATCGACCTTGAGCCGGGTGAGTTACCCAGTGAGAGCTTTTCTGATGATGCCATTCAATCTGGCACGAGGGTTAAAGATAGCGTGGTTTCAAAGGTGGTAGAAAATGGGAATCTATCTCCCATGGAGAGGAAGAGAAAATTTTCGCCTATAGTTTGGGATAGGGACGACAACAAATTGAGTAATTTATCTCAAAATAGGACTGTCACAACAGTGATGGGTCTTCCACGGCCACAAAAGTCGACTCGCCGTTCTCCTAATAATATCTCAGGCCGAGGTGTGCATAATTCTGAAATTAAGTCTCCTTTAGTTTCTGCACATGAAATGTCACCGTCAATAGCAAAGTCATCGCCTGCTTTAGGAGAACATTTGCATCAGAATGTAGAAGTCGAAGTAGAAGTAAAAGTGTTAGTTAACGAAGCAAATGGTCCCGCAAGAAATATCTCCTTTTCACGGTGGGCAGGTGGAGATACATCTCCAGCTGATGAAGGCCAGGTTTTAGACGATAGAGAAATTCATAGACAAAAGAAAACACTTGATACTGAAATTAAGGAAACCGATGTACATTGCAAGACCTCGAGTGATTCATCTTCTGAAGTTCGGGGCCTCAAGAGCAATGGTTTCAAGTCCAAAGAAACGAGTGTGAGGTCGTCTGAATCTAATGAACTGGGTGCCCATTGTAGATTTTTGAGTGTGGATGAGTATTCTGGTGGTGAGGTGGAAAAGGGTGACACCATGGAGGCTGACGTGAGGCATGATATTAGTGATGTTAGTTTTAGTTCTTCAGATTCTGATTCTGGTTCTTATGACGATAATGGCGTTTGTGCCACCCAGGAGCCTCCAGGTCGCACTCAACGAAGTGTAAACATGCTTCAGGGATGTAGAAGTGTTGATGTATATGAGAGACTAAACAAGATTAACGAAGGCACCTACGGGGTTGTGTATAGAGCCAGAGACAAGAAGACGGGGGAAATTGTGGCCTTGAAGAAGGTAAAAATGGAAAAGGAGAGGGAAGGGTTCCCGCTGACTGCTTTGAGAGAAATGAATATTCTTCTTTCATTCCATCATCCATCAATCGTGGATGTGAAAGAAGTTGTGGTGGGAAGTAGTCTTGATAGCATTTTTATGGCGATGGAATATATGGAGCACGATCTTAAAGGACTCATGGAGGTCATGAAACATCCTTTTAGTCAGAGTGAAGTAAAATGCTTAATGATCCAGCTATTGGAGGGTGTTAGGTATCTCCACAGTAACTGGGTTCTTCATAGGGACTTAAAGACATCTAATTTGCTTTTGAACAACCAGGGTGAATTGAAGATATGTGACTTTGGATTGGCTCGTCAATATGGAAGTCCTTTGAAGCCATATACACACTTAGTTGTTACTCTTTGGTACAGGGCACCTGAACTTCTGTTGGGAGCAAGACAGTATTCAACAGCAATTGATATGTGGTCCTTGGGTTGTATCATGGCCGAACTTCTATCAAAGCAACCTCTTTTTAATGGGAAAACTGAAGCTGACCAACTTGATAAGATTTTTAGAACTCTTGGCACTCCAAATGAGACTATTTGGCCTGGATTCTCCAAGTTACCTGGTGTTAGAGTCAACTTCGTGAAGCATCAGTAA | 1899 | 43.39 | MASGRHGGYPENEFRDRETNFHVSRRSFGSARQQFERVKVSNDDRIARDNVRVRDREVKEHAVVNGNFHLSSCNLDSGENIDGSMRIRVSSTIDLEPGELPSESFSDDAIQSGTRVKDSVVSKVVENGNLSPMERKRKFSPIVWDRDDNKLSNLSQNRTVTTVMGLPRPQKSTRRSPNNISGRGVHNSEIKSPLVSAHEMSPSIAKSSPALGEHLHQNVEVEVEVKVLVNEANGPARNISFSRWAGGDTSPADEGQVLDDREIHRQKKTLDTEIKETDVHCKTSSDSSSEVRGLKSNGFKSKETSVRSSESNELGAHCRFLSVDEYSGGEVEKGDTMEADVRHDISDVSFSSSDSDSGSYDDNGVCATQEPPGRTQRSVNMLQGCRSVDVYERLNKINEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTALREMNILLSFHHPSIVDVKEVVVGSSLDSIFMAMEYMEHDLKGLMEVMKHPFSQSEVKCLMIQLLEGVRYLHSNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKQPLFNGKTEADQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQ | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 163933 | 168143 | + | Sed0001677.4 | Sed04g0032 | 708635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0032 | 632 | FunFam | cyclin-dependent kinase G-2 isoform X1 | 376 | 473 | - | - | |
Sed04g0032 | 632 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 511 | 523 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 329 | 349 | - | - | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 276 | 310 | - | - | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 167 | 186 | - | - | |
Sed04g0032 | 632 | PANTHER | CELL DIVISION PROTEIN KINASE | 391 | 625 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER) | |
Sed04g0032 | 632 | FunFam | Mitogen-activated protein kinase | 472 | 616 | - | - | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 329 | 377 | - | - | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 286 | 310 | - | - | |
Sed04g0032 | 632 | Gene3D | Phosphorylase Kinase; domain 1 | 374 | 473 | - | - | |
Sed04g0032 | 632 | SMART | serkin_6 | 391 | 629 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g0032 | 632 | MobiDBLite | consensus disorder prediction | 350 | 377 | - | - | |
Sed04g0032 | 632 | CDD | STKc_CDC2L1 | 385 | 632 | IPR045267 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g0032 | 632 | Pfam | Protein kinase domain | 391 | 607 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g0032 | 632 | Gene3D | Transferase(Phosphotransferase) domain 1 | 474 | 631 | - | - | |
Sed04g0032 | 632 | SUPERFAMILY | Protein kinase-like (PK-like) | 383 | 625 | IPR011009 | - | |
Sed04g0032 | 632 | ProSiteProfiles | Protein kinase domain profile. | 391 | 632 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0030 | Sed-Chr4:163933 | Sed04g0032 | Sed-Chr4:163933 | 0.00E+00 | dispersed | |
Sed04g0032 | Sed-Chr4:163933 | Sed06g1734 | Sed-Chr6:42005516 | 4.10E-176 | dispersed | |
Sed04g0031 | Sed-Chr4:163933 | Sed04g0032 | Sed-Chr4:163933 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78952 | PF00069 | Pkinase | 5.20E-65 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0032 | K08818 | - | csv:101221702 | 895.19 |