Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0032 ATGGCGTCTGGGCGACATGGAGGCTACCCCGAGAATGAGTTCAGGGACCGGGAGACCAATTTTCACGTTTCCAGGAGGTCGTTTGGCAGCGCCAGGCAGCAATTTGAAAGAGTTAAGGTCAGCAACGACGATCGTATTGCCAGAGACAATGTTAGGGTTAGGGATCGGGAAGTGAAGGAACACGCGGTCGTCAATGGTAATTTTCATTTGTCTTCTTGCAATCTTGATTCGGGTGAAAACATTGATGGTTCAATGCGAATTAGGGTTTCTAGTACCATCGACCTTGAGCCGGGTGAGTTACCCAGTGAGAGCTTTTCTGATGATGCCATTCAATCTGGCACGAGGGTTAAAGATAGCGTGGTTTCAAAGGTGGTAGAAAATGGGAATCTATCTCCCATGGAGAGGAAGAGAAAATTTTCGCCTATAGTTTGGGATAGGGACGACAACAAATTGAGTAATTTATCTCAAAATAGGACTGTCACAACAGTGATGGGTCTTCCACGGCCACAAAAGTCGACTCGCCGTTCTCCTAATAATATCTCAGGCCGAGGTGTGCATAATTCTGAAATTAAGTCTCCTTTAGTTTCTGCACATGAAATGTCACCGTCAATAGCAAAGTCATCGCCTGCTTTAGGAGAACATTTGCATCAGAATGTAGAAGTCGAAGTAGAAGTAAAAGTGTTAGTTAACGAAGCAAATGGTCCCGCAAGAAATATCTCCTTTTCACGGTGGGCAGGTGGAGATACATCTCCAGCTGATGAAGGCCAGGTTTTAGACGATAGAGAAATTCATAGACAAAAGAAAACACTTGATACTGAAATTAAGGAAACCGATGTACATTGCAAGACCTCGAGTGATTCATCTTCTGAAGTTCGGGGCCTCAAGAGCAATGGTTTCAAGTCCAAAGAAACGAGTGTGAGGTCGTCTGAATCTAATGAACTGGGTGCCCATTGTAGATTTTTGAGTGTGGATGAGTATTCTGGTGGTGAGGTGGAAAAGGGTGACACCATGGAGGCTGACGTGAGGCATGATATTAGTGATGTTAGTTTTAGTTCTTCAGATTCTGATTCTGGTTCTTATGACGATAATGGCGTTTGTGCCACCCAGGAGCCTCCAGGTCGCACTCAACGAAGTGTAAACATGCTTCAGGGATGTAGAAGTGTTGATGTATATGAGAGACTAAACAAGATTAACGAAGGCACCTACGGGGTTGTGTATAGAGCCAGAGACAAGAAGACGGGGGAAATTGTGGCCTTGAAGAAGGTAAAAATGGAAAAGGAGAGGGAAGGGTTCCCGCTGACTGCTTTGAGAGAAATGAATATTCTTCTTTCATTCCATCATCCATCAATCGTGGATGTGAAAGAAGTTGTGGTGGGAAGTAGTCTTGATAGCATTTTTATGGCGATGGAATATATGGAGCACGATCTTAAAGGACTCATGGAGGTCATGAAACATCCTTTTAGTCAGAGTGAAGTAAAATGCTTAATGATCCAGCTATTGGAGGGTGTTAGGTATCTCCACAGTAACTGGGTTCTTCATAGGGACTTAAAGACATCTAATTTGCTTTTGAACAACCAGGGTGAATTGAAGATATGTGACTTTGGATTGGCTCGTCAATATGGAAGTCCTTTGAAGCCATATACACACTTAGTTGTTACTCTTTGGTACAGGGCACCTGAACTTCTGTTGGGAGCAAGACAGTATTCAACAGCAATTGATATGTGGTCCTTGGGTTGTATCATGGCCGAACTTCTATCAAAGCAACCTCTTTTTAATGGGAAAACTGAAGCTGACCAACTTGATAAGATTTTTAGAACTCTTGGCACTCCAAATGAGACTATTTGGCCTGGATTCTCCAAGTTACCTGGTGTTAGAGTCAACTTCGTGAAGCATCAGTAA 1899 43.39 MASGRHGGYPENEFRDRETNFHVSRRSFGSARQQFERVKVSNDDRIARDNVRVRDREVKEHAVVNGNFHLSSCNLDSGENIDGSMRIRVSSTIDLEPGELPSESFSDDAIQSGTRVKDSVVSKVVENGNLSPMERKRKFSPIVWDRDDNKLSNLSQNRTVTTVMGLPRPQKSTRRSPNNISGRGVHNSEIKSPLVSAHEMSPSIAKSSPALGEHLHQNVEVEVEVKVLVNEANGPARNISFSRWAGGDTSPADEGQVLDDREIHRQKKTLDTEIKETDVHCKTSSDSSSEVRGLKSNGFKSKETSVRSSESNELGAHCRFLSVDEYSGGEVEKGDTMEADVRHDISDVSFSSSDSDSGSYDDNGVCATQEPPGRTQRSVNMLQGCRSVDVYERLNKINEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTALREMNILLSFHHPSIVDVKEVVVGSSLDSIFMAMEYMEHDLKGLMEVMKHPFSQSEVKCLMIQLLEGVRYLHSNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKQPLFNGKTEADQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQ 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 163933 168143 + Sed0001677.4 Sed04g0032 708635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0032 632 FunFam cyclin-dependent kinase G-2 isoform X1 376 473 - -
Sed04g0032 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0032 632 MobiDBLite consensus disorder prediction 329 349 - -
Sed04g0032 632 MobiDBLite consensus disorder prediction 276 310 - -
Sed04g0032 632 MobiDBLite consensus disorder prediction 167 186 - -
Sed04g0032 632 PANTHER CELL DIVISION PROTEIN KINASE 391 625 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Sed04g0032 632 FunFam Mitogen-activated protein kinase 472 616 - -
Sed04g0032 632 MobiDBLite consensus disorder prediction 329 377 - -
Sed04g0032 632 MobiDBLite consensus disorder prediction 286 310 - -
Sed04g0032 632 Gene3D Phosphorylase Kinase; domain 1 374 473 - -
Sed04g0032 632 SMART serkin_6 391 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0032 632 MobiDBLite consensus disorder prediction 350 377 - -
Sed04g0032 632 CDD STKc_CDC2L1 385 632 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0032 632 Pfam Protein kinase domain 391 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0032 632 Gene3D Transferase(Phosphotransferase) domain 1 474 631 - -
Sed04g0032 632 SUPERFAMILY Protein kinase-like (PK-like) 383 625 IPR011009 -
Sed04g0032 632 ProSiteProfiles Protein kinase domain profile. 391 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0030 Sed-Chr4:163933 Sed04g0032 Sed-Chr4:163933 0.00E+00 dispersed
Sed04g0032 Sed-Chr4:163933 Sed06g1734 Sed-Chr6:42005516 4.10E-176 dispersed
Sed04g0031 Sed-Chr4:163933 Sed04g0032 Sed-Chr4:163933 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78952 PF00069 Pkinase 5.20E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0032 K08818 - csv:101221702 895.19