Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0038 ATGGATTTTATTTCTGAGGTTGAAGAAAATCTATTTGCAGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACCCTTTCTGCATTATATTGTAAAGTATTATCAATTTTCCCTTCATTGGAAGCTGCACGGCCTCGTAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTTGAAAAGGCCAAGAATAATCTCCAACATTGTTCAGAGAGTAGCAAACTTTACTTGGCTATAACCGGAGACTCCATCTTGTTGAAGTTTGAGAAAGTAAAAAATGCTTTGCAAGATAGTCTTAAACGTGTCGAAGATATTGTTCCACAGTCGATTGCCTCTCAGCTTCAGGAGATTATGAAGGAAGTGGGGAGCACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAATTGGCGATGACATTATTTTGTTGCTCCAACAAGGACGAACATTTAGCAACACTGTTGACAATAATGAGCTTGAGGCTTTTCACCAAGCTGCTATCAGACTTGGAATAAACTCCTCAAGAGCTGCTCTAGCAGAGAGAAGAGCACTCAAGAAACTAATCGACCGGTCTCGCAGTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTCGAAGTGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACAGTTCAGAGCTCTCTTGAGGACAGTGGACCTGGTGAAAACGGTCAAGCCTTTGAAAGACAGCTAACAAAGCTTGGTTCGTTTACTTTGAAGCCAAAAAACCCCAGATTGGAACAGATTCCACTTCCACCGGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGAATTTGCATTGAGAAGTGGTTAAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCACATCTTTCATTGACACCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGATCAGCATGAAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCCGAATCGGAGTCTCTAAATTCATCTCATACGGACACTATTGGTTCTTGCAAGTTGAAAGATGTTAAAGTTGTTCCCGTAGACGAAACCAGTACAACTGAGGAGATCAAAGAAACTGTAGTGGATGATAACTCTGCTGAAGACCAAGAGTCTGGCACAAATATGCTTAATAGATACGAGCATTATTTGGAAGTACTGAATGAAGAAGGTGACTTGAGGAAAAAGTCGTTGGTTGTTGAGCAAATAAGAATGTTGCTCAAGGATGACGAAGAGGCGAGGATTTTTATGGGAGCTAAAGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTTCAAGAACAAAATGTCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACAACAGGAACAAGGAAATAATGCTAGCTGAAGGGGTGATTTCATTGTTGGAGGAAATGATTGTGAACACAAATTCCCATGGATCAGCAACGGCCCTCTATCTCAATGTGTCCTGTCTCGAAGAAGCGAAATCTATTATCGGCTCGAGTTGTGCGGTCCCATACTTGACTCAACTCCTCCATGCTGATGCCGAAACACTATGCAAGCTTGATGCCCTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAGTATTCCCAACCTGGTTTGTTTTGGAATCGTCAGGGGAATTCAGTCACTTCTTGCAGCCCCTCTCGGTCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTACAAGTGTATCAGGTAGGGATCAAATGTGCTCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATCCTTTGCAATGGGAATGAGATGTGCAGTGAGATGGTCCTACAGGAAGGCGTTATTCCTGGGCTGGTATCGATGTCTGTGAACGGGACTGCTAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTATTCAGGGAGCAACGACAACGGGAGCCGCTGACATCGACGACTAAACCGACCGAGCAGCCAGAGAGTAATGAGGCACCCATGCCTGTGGCAGAACCAAAAAAGCCATTGTGCAAGTCAATGTCGAGAAGAAAAACACGAAAAGGTTTAAGTTTTTTATGGAAAAGCAAAAGCTATTCAGTGGTGTAA 2313 43.49 MDFISEVEENLFAASDAKLHGGMCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNNLQHCSESSKLYLAITGDSILLKFEKVKNALQDSLKRVEDIVPQSIASQLQEIMKEVGSTQFFLDPLEKQIGDDIILLLQQGRTFSNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRSEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGENGQAFERQLTKLGSFTLKPKNPRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCDQHEVPVPDGPPDSLDLNYWRLALSESESLNSSHTDTIGSCKLKDVKVVPVDETSTTEEIKETVVDDNSAEDQESGTNMLNRYEHYLEVLNEEGDLRKKSLVVEQIRMLLKDDEEARIFMGAKGFVQGLLRYLEIAVQEQNVKAQESGAMALFNLAVNNNRNKEIMLAEGVISLLEEMIVNTNSHGSATALYLNVSCLEEAKSIIGSSCAVPYLTQLLHADAETLCKLDALHTLYNLSTVPSSIPNLVCFGIVRGIQSLLAAPLGRTWTEKCIAILINLATSVSGRDQMCSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNEMCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPLTSTTKPTEQPESNEAPMPVAEPKKPLCKSMSRRKTRKGLSFLWKSKSYSVV 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 184970 189920 - Sed0010046.1 Sed04g0038 708641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0038 770 SUPERFAMILY RING/U-box 280 356 - -
Sed04g0038 770 Gene3D - 613 710 IPR011989 -
Sed04g0038 770 Gene3D - 440 611 IPR011989 -
Sed04g0038 770 PANTHER U BOX DOMAIN-CONTAINING 23 715 - -
Sed04g0038 770 MobiDBLite consensus disorder prediction 714 754 - -
Sed04g0038 770 SUPERFAMILY ARM repeat 425 709 IPR016024 -
Sed04g0038 770 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g0038 770 CDD RING-Ubox_PUB 281 333 IPR045210 -
Sed04g0038 770 Gene3D - 11 106 IPR036537 GO:0007166(InterPro)
Sed04g0038 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Sed04g0038 770 MobiDBLite consensus disorder prediction 222 253 - -
Sed04g0038 770 MobiDBLite consensus disorder prediction 225 248 - -
Sed04g0038 770 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g0038 770 MobiDBLite consensus disorder prediction 715 730 - -
Sed04g0038 770 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Sed04g0038 770 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0038 Sed-Chr4:184970 Sed13g0893 Sed-Chr13:6611186 7.10E-74 dispersed
Sed04g0038 Sed-Chr4:184970 Sed04g0039 Sed-Chr4:184970 0.00E+00 tandem
Sed01g0591 Sed-Chr1:4299719 Sed04g0038 Sed-Chr4:184970 5.80E-18 transposed
Sed03g2615 Sed-Chr3:42029330 Sed04g0038 Sed-Chr4:184970 0.00E+00 wgd
Sed04g0038 Sed-Chr4:184970 Sed06g1738 Sed-Chr6:42045814 2.00E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0038 - - - 0.0