Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0039 | ATGGATTTTATTTCTGAGGTTGAAGAAAATCTATTTGCAGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACCCTTTCTGCATTATATTGTAAAGTATTATCAATTTTCCCTTCATTGGAAGCTGCACGGCCTCGTAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTTGAAAAGGCCAAGAATAATCTCCAACATTGTTCAGAGAGTAGCAAACTTTACTTGGCTATAACCGGAGACTCCATCTTGTTGAAGTTTGAGAAAGTAAAAAATGCTTTGCAAGATAGTCTTAAACGTGTCGAAGATATTGTTCCACAGTCGATTGCCTCTCAGCTTCAGGAGATTATGAAGGAAGTGGGGAGCACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAATTGGCGATGACATTATTTTGTTGCTCCAACAAGGACGAACATTTAGCAACACTGTTGACAATAATGAGCTTGAGGCTTTTCACCAAGCTGCTATCAGACTTGGAATAAACTCCTCAAGAGCTGCTCTAGCAGAGAGAAGAGCACTCAAGAAACTAATCGACCGGTCTCGCAGTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTCGAAGTGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACAGTTCAGAGCTCTCTTGAGGACAGTGGACCTGGTGAAAACGGTCAAGCCTTTGAAAGACAGCTAACAAAGCTTGGTTCGTTTACTTTGAAGCCAAAAAACCCCAGATTGGAACAGATTCCACTTCCACCGGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGAATTTGCATTGAGAAGTGGTTAAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCACATCTTTCATTGACACCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGATCAGCATGAAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCCGAATCGGAGTCTCTAAATTCATCTCATACGGACACTATTGGTTCTTGCAAGTTGAAAGATGTTAAAGTTGTTCCCGTAGACGAAACCAGTACAACTGAGGAGATCAAAGAAACTGTAGTGGATGATAACTCTGCTGAAGACCAAGAGTCTGGCACAAATATGCTTAATAGATACGAGCATTATTTGGAAGTACTGAATGAAGAAGGTGACTTGAGGAAAAAGTCGTTGGTTGTTGAGCAAATAAGAATGTTGCTCAAGGATGACGAAGAGGCGAGGATTTTTATGGGAGCTAAAGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTTCAAGAACAAAATGTCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACAACAGGAACAAGGAAATAATGCTAGCTGAAGGGGTGATTTCATTGTTGGAGGAAATGATTGTGAACACAAATTCCCATGGATCAGCAACGGCCCTCTATCTCAATGTGTCCTGTCTCGAAGAAGCGAAATCTATTATCGGCTCGAGTTGTGCGGTCCCATACTTGACTCAACTCCTCCATGCTGATGCCGAAACACTATGCAAGCTTGATGCCCTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAGTATTCCCAACCTGGTTTGTTTTGGAATCGTCAGGGGAATTCAGTCACTTCTTGCAGCCCCTCTCGGTCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTACAAGTGTATCAGGTAGGGATCAAATGTGCTCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATCCTTTGCAATGGGAATGAGATGTGCAGTGAGATGGTCCTACAGGAAGGCGTTATTCCTGGGCTGGTATCGATGTCTGTGAACGGGACTGCTAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTATTCAGGGAGCAACGACAACGGGAGCCGCTGACATCGACGACTAAACCGACCGAGCAGCCAGAGAGTAATGAGGCACCCATGCCTGTGGCAGAACCAAAAAAGCCATTGTGCAAGTCAATGTCGAGAAGAAAAACACGAAAAGGTTTAAGTTTTTTATGGAAAAGCAAAAGCTATTCAGTGGTGTAA | 2313 | 43.49 | MDFISEVEENLFAASDAKLHGGMCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNNLQHCSESSKLYLAITGDSILLKFEKVKNALQDSLKRVEDIVPQSIASQLQEIMKEVGSTQFFLDPLEKQIGDDIILLLQQGRTFSNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRSEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGENGQAFERQLTKLGSFTLKPKNPRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCDQHEVPVPDGPPDSLDLNYWRLALSESESLNSSHTDTIGSCKLKDVKVVPVDETSTTEEIKETVVDDNSAEDQESGTNMLNRYEHYLEVLNEEGDLRKKSLVVEQIRMLLKDDEEARIFMGAKGFVQGLLRYLEIAVQEQNVKAQESGAMALFNLAVNNNRNKEIMLAEGVISLLEEMIVNTNSHGSATALYLNVSCLEEAKSIIGSSCAVPYLTQLLHADAETLCKLDALHTLYNLSTVPSSIPNLVCFGIVRGIQSLLAAPLGRTWTEKCIAILINLATSVSGRDQMCSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNEMCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPLTSTTKPTEQPESNEAPMPVAEPKKPLCKSMSRRKTRKGLSFLWKSKSYSVV | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 184970 | 190144 | - | Sed0010046.2 | Sed04g0039 | 708642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0039 | 770 | SUPERFAMILY | RING/U-box | 280 | 356 | - | - | |
Sed04g0039 | 770 | Gene3D | - | 613 | 710 | IPR011989 | - | |
Sed04g0039 | 770 | Gene3D | - | 440 | 611 | IPR011989 | - | |
Sed04g0039 | 770 | PANTHER | U BOX DOMAIN-CONTAINING | 23 | 715 | - | - | |
Sed04g0039 | 770 | MobiDBLite | consensus disorder prediction | 714 | 754 | - | - | |
Sed04g0039 | 770 | SUPERFAMILY | ARM repeat | 425 | 709 | IPR016024 | - | |
Sed04g0039 | 770 | Pfam | U-box domain | 281 | 351 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed04g0039 | 770 | CDD | RING-Ubox_PUB | 281 | 333 | IPR045210 | - | |
Sed04g0039 | 770 | Gene3D | - | 11 | 106 | IPR036537 | GO:0007166(InterPro) | |
Sed04g0039 | 770 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 353 | IPR013083 | - | |
Sed04g0039 | 770 | MobiDBLite | consensus disorder prediction | 222 | 253 | - | - | |
Sed04g0039 | 770 | MobiDBLite | consensus disorder prediction | 225 | 248 | - | - | |
Sed04g0039 | 770 | ProSiteProfiles | U-box domain profile. | 279 | 353 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed04g0039 | 770 | MobiDBLite | consensus disorder prediction | 715 | 730 | - | - | |
Sed04g0039 | 770 | FunFam | RING-type E3 ubiquitin transferase | 279 | 353 | - | - | |
Sed04g0039 | 770 | SMART | Ubox_2 | 283 | 346 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2615 | Sed-Chr3:42029330 | Sed04g0039 | Sed-Chr4:184970 | 0.00E+00 | dispersed | |
Sed04g0039 | Sed-Chr4:184970 | Sed06g1738 | Sed-Chr6:42045814 | 2.00E-270 | dispersed | |
Sed04g0038 | Sed-Chr4:184970 | Sed04g0039 | Sed-Chr4:184970 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0039 | - | - | - | 0.0 |