Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0039 ATGGATTTTATTTCTGAGGTTGAAGAAAATCTATTTGCAGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACCCTTTCTGCATTATATTGTAAAGTATTATCAATTTTCCCTTCATTGGAAGCTGCACGGCCTCGTAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTTGAAAAGGCCAAGAATAATCTCCAACATTGTTCAGAGAGTAGCAAACTTTACTTGGCTATAACCGGAGACTCCATCTTGTTGAAGTTTGAGAAAGTAAAAAATGCTTTGCAAGATAGTCTTAAACGTGTCGAAGATATTGTTCCACAGTCGATTGCCTCTCAGCTTCAGGAGATTATGAAGGAAGTGGGGAGCACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAATTGGCGATGACATTATTTTGTTGCTCCAACAAGGACGAACATTTAGCAACACTGTTGACAATAATGAGCTTGAGGCTTTTCACCAAGCTGCTATCAGACTTGGAATAAACTCCTCAAGAGCTGCTCTAGCAGAGAGAAGAGCACTCAAGAAACTAATCGACCGGTCTCGCAGTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTCGAAGTGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACAGTTCAGAGCTCTCTTGAGGACAGTGGACCTGGTGAAAACGGTCAAGCCTTTGAAAGACAGCTAACAAAGCTTGGTTCGTTTACTTTGAAGCCAAAAAACCCCAGATTGGAACAGATTCCACTTCCACCGGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGAATTTGCATTGAGAAGTGGTTAAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCACATCTTTCATTGACACCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGATCAGCATGAAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCCGAATCGGAGTCTCTAAATTCATCTCATACGGACACTATTGGTTCTTGCAAGTTGAAAGATGTTAAAGTTGTTCCCGTAGACGAAACCAGTACAACTGAGGAGATCAAAGAAACTGTAGTGGATGATAACTCTGCTGAAGACCAAGAGTCTGGCACAAATATGCTTAATAGATACGAGCATTATTTGGAAGTACTGAATGAAGAAGGTGACTTGAGGAAAAAGTCGTTGGTTGTTGAGCAAATAAGAATGTTGCTCAAGGATGACGAAGAGGCGAGGATTTTTATGGGAGCTAAAGGATTTGTCCAGGGACTTCTACGCTACTTAGAGATAGCTGTTCAAGAACAAAATGTCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACAACAGGAACAAGGAAATAATGCTAGCTGAAGGGGTGATTTCATTGTTGGAGGAAATGATTGTGAACACAAATTCCCATGGATCAGCAACGGCCCTCTATCTCAATGTGTCCTGTCTCGAAGAAGCGAAATCTATTATCGGCTCGAGTTGTGCGGTCCCATACTTGACTCAACTCCTCCATGCTGATGCCGAAACACTATGCAAGCTTGATGCCCTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAGTATTCCCAACCTGGTTTGTTTTGGAATCGTCAGGGGAATTCAGTCACTTCTTGCAGCCCCTCTCGGTCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTACAAGTGTATCAGGTAGGGATCAAATGTGCTCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAACCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATCCTTTGCAATGGGAATGAGATGTGCAGTGAGATGGTCCTACAGGAAGGCGTTATTCCTGGGCTGGTATCGATGTCTGTGAACGGGACTGCTAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTATTCAGGGAGCAACGACAACGGGAGCCGCTGACATCGACGACTAAACCGACCGAGCAGCCAGAGAGTAATGAGGCACCCATGCCTGTGGCAGAACCAAAAAAGCCATTGTGCAAGTCAATGTCGAGAAGAAAAACACGAAAAGGTTTAAGTTTTTTATGGAAAAGCAAAAGCTATTCAGTGGTGTAA 2313 43.49 MDFISEVEENLFAASDAKLHGGMCKTLSALYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNNLQHCSESSKLYLAITGDSILLKFEKVKNALQDSLKRVEDIVPQSIASQLQEIMKEVGSTQFFLDPLEKQIGDDIILLLQQGRTFSNTVDNNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRSEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGENGQAFERQLTKLGSFTLKPKNPRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCDQHEVPVPDGPPDSLDLNYWRLALSESESLNSSHTDTIGSCKLKDVKVVPVDETSTTEEIKETVVDDNSAEDQESGTNMLNRYEHYLEVLNEEGDLRKKSLVVEQIRMLLKDDEEARIFMGAKGFVQGLLRYLEIAVQEQNVKAQESGAMALFNLAVNNNRNKEIMLAEGVISLLEEMIVNTNSHGSATALYLNVSCLEEAKSIIGSSCAVPYLTQLLHADAETLCKLDALHTLYNLSTVPSSIPNLVCFGIVRGIQSLLAAPLGRTWTEKCIAILINLATSVSGRDQMCSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNEMCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPLTSTTKPTEQPESNEAPMPVAEPKKPLCKSMSRRKTRKGLSFLWKSKSYSVV 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 184970 190144 - Sed0010046.2 Sed04g0039 708642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0039 770 SUPERFAMILY RING/U-box 280 356 - -
Sed04g0039 770 Gene3D - 613 710 IPR011989 -
Sed04g0039 770 Gene3D - 440 611 IPR011989 -
Sed04g0039 770 PANTHER U BOX DOMAIN-CONTAINING 23 715 - -
Sed04g0039 770 MobiDBLite consensus disorder prediction 714 754 - -
Sed04g0039 770 SUPERFAMILY ARM repeat 425 709 IPR016024 -
Sed04g0039 770 Pfam U-box domain 281 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g0039 770 CDD RING-Ubox_PUB 281 333 IPR045210 -
Sed04g0039 770 Gene3D - 11 106 IPR036537 GO:0007166(InterPro)
Sed04g0039 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Sed04g0039 770 MobiDBLite consensus disorder prediction 222 253 - -
Sed04g0039 770 MobiDBLite consensus disorder prediction 225 248 - -
Sed04g0039 770 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed04g0039 770 MobiDBLite consensus disorder prediction 715 730 - -
Sed04g0039 770 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Sed04g0039 770 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2615 Sed-Chr3:42029330 Sed04g0039 Sed-Chr4:184970 0.00E+00 dispersed
Sed04g0039 Sed-Chr4:184970 Sed06g1738 Sed-Chr6:42045814 2.00E-270 dispersed
Sed04g0038 Sed-Chr4:184970 Sed04g0039 Sed-Chr4:184970 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0039 - - - 0.0