Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0058 ATGAGCAATTTGAGGACGGCTTGCAGGCCTCACGCCATGATTTCTTCCTTCCTCTTTAGCAGCAGATTCCAGTCTATGCCCTCTGTTTCGTTTCGGAAAAACCCTAATTACAACAACAAGCCTCGCTTTTCACTTTTCTCTCCCACTTTCAATTCCTCCTTTGGCTTTTCTCGCACTGAGAACTGCTTCCGTTTCAATCGGAGGAGGAGGAGGACGACGCTCGCCATGGCTTCCGATTGGGCTAATGAAAAATCTCCCTATGAAACTCTCGAGTTAGAGAGGGATGCTGATGAAGAACAGATAAAGAGTGCCTATAGGCGCCTGGCCAAATTTTATCATCCAGATGTTTATGATGGTAGAGGAACCCTTGAAGAAGGAGAGACAGCTGAAGCTAGATTCATCAAGATTCAAGCTGCTTACGAGTTGCTCTTAGACGACGAGAAGCGGAGGCAGTATGATGTAGATAACCGGGTTAATCCTATGAAGGCATCTCAAGCATGGATGGAGTGGCTTATCAAAAAGCGCAAAGCTTTTGATCAACGGGGTGACATGGCAATAGCAGCTTGGGCTGAGCAACAGCAGCGCCAGATGAGTCTACGGGCACGACGCCTTTCTCGATCAAAGGTTGATCCAGACGAAGAGAAAAGGCTACTGGCAAAAGAAAAAAAGGCGTCAATAGAGCATTTTAACAGCACACTGAAACGACATACGCTTGTTTTGAAGAAGAGGGATTTAATGCGAAAAAAAGCAGAGGAAAAGAAAAAGGTAATAAGCCAACTTTTAGCCGAGGAAGGCTTCGAGCTCGATACAGACGACGATGACAACCTGTAG 831 46.09 MSNLRTACRPHAMISSFLFSSRFQSMPSVSFRKNPNYNNKPRFSLFSPTFNSSFGFSRTENCFRFNRRRRRTTLAMASDWANEKSPYETLELERDADEEQIKSAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLLDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRQMSLRARRLSRSKVDPDEEKRLLAKEKKASIEHFNSTLKRHTLVLKKRDLMRKKAEEKKKVISQLLAEEGFELDTDDDDNL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 305041 308026 - Sed0027281.1 Sed04g0058 708661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0058 276 PRINTS DnaJ domain signature 128 148 IPR001623 -
Sed04g0058 276 PRINTS DnaJ domain signature 87 105 IPR001623 -
Sed04g0058 276 PRINTS DnaJ domain signature 174 193 IPR001623 -
Sed04g0058 276 PRINTS DnaJ domain signature 105 120 IPR001623 -
Sed04g0058 276 CDD DnaJ 86 145 IPR001623 -
Sed04g0058 276 ProSiteProfiles dnaJ domain profile. 85 156 IPR001623 -
Sed04g0058 276 Gene3D DnaJ domain 72 169 IPR036869 -
Sed04g0058 276 FunFam Chaperone protein dnaJ 70 176 - -
Sed04g0058 276 Coils Coil 87 107 - -
Sed04g0058 276 SUPERFAMILY Chaperone J-domain 40 152 IPR036869 -
Sed04g0058 276 Pfam DnaJ domain 86 153 IPR001623 -
Sed04g0058 276 SMART dnaj_3 84 148 IPR001623 -
Sed04g0058 276 PANTHER CO-CHAPERONE PROTEIN DJLA 86 272 IPR050817 -
Sed04g0058 276 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0058 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0058 Sed-Chr4:305041 Sed07g1771 Sed-Chr7:18224785 1.10E-08 dispersed
Sed04g0058 Sed-Chr4:305041 Sed05g1430 Sed-Chr5:27816074 4.90E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40