Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0071 ATGGCTACTGTTGGCAGTCCCATGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGCCAGAGGTCTGATGATAGAGGCCAAACACGTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAATCTGATCAGAAGACGCTTCGCCGGTTAGCACAAAATCGAGAGGCTGCAAGGAAAAGCCGATTAAGGAAAAAAGCATATGTTCAACAATTAGAGAGCAGTCGCTTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGGCCCATTCAATGAGTGGAAACGGAGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAAGATCAAAACCGTCAGATGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCAGAACTGCGTATTGTAGTTGATGGCATATTGGCTCATTATGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCAAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGCTTTCTTTGGCTTGGTGGTTTTCGCTCTTCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAACAGTTGGTGGGGATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACGTTGTCGAGCGGATCTCTTGGTTCCTCTAGTTCAGGGAACGTTGCAAACTATATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACGCTCGAAGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACGCTTCAACAAATGCATCGAATACTGACAACTCGGCAGTCTGCTCGTGCGCTTCTAGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAAAGAGTAA 999 46.95 MATVGSPMTDISTDGDTDEKSQRSDDRGQTRVMASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEDQNRQMNELRSAVNSHASDPELRIVVDGILAHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 431713 438170 + Sed0021118.1 Sed04g0071 708674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0071 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0071 332 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g0071 332 ProSiteProfiles DOG1 domain profile. 113 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g0071 332 MobiDBLite consensus disorder prediction 13 50 - -
Sed04g0071 332 PANTHER TRANSCRIPTION FACTOR TGA9 21 332 - -
Sed04g0071 332 SMART brlzneu 44 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0071 332 FunFam BZIP family transcription factor 47 96 - -
Sed04g0071 332 Coils Coil 67 94 - -
Sed04g0071 332 Gene3D - 47 99 - -
Sed04g0071 332 MobiDBLite consensus disorder prediction 1 50 - -
Sed04g0071 332 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0071 332 Coils Coil 124 144 - -
Sed04g0071 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0071 332 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1174 Sed-Chr3:7331470 Sed04g0071 Sed-Chr4:431713 5.00E-120 dispersed
Sed04g0071 Sed-Chr4:431713 Sed04g2662 Sed-Chr4:39068829 9.00E-143 dispersed
Sed04g0071 Sed-Chr4:431713 Sed04g0072 Sed-Chr4:431713 5.10E-146 tandem
Sed03g2282 Sed-Chr3:17274041 Sed04g0071 Sed-Chr4:431713 1.30E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37996 PF14144 DOG1 1.20E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0071 K14431 - csv:101213210 556.984