Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0071 | ATGGCTACTGTTGGCAGTCCCATGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGCCAGAGGTCTGATGATAGAGGCCAAACACGTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAATCTGATCAGAAGACGCTTCGCCGGTTAGCACAAAATCGAGAGGCTGCAAGGAAAAGCCGATTAAGGAAAAAAGCATATGTTCAACAATTAGAGAGCAGTCGCTTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGGCCCATTCAATGAGTGGAAACGGAGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAAGATCAAAACCGTCAGATGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCAGAACTGCGTATTGTAGTTGATGGCATATTGGCTCATTATGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCAAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGCTTTCTTTGGCTTGGTGGTTTTCGCTCTTCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAACAGTTGGTGGGGATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACGTTGTCGAGCGGATCTCTTGGTTCCTCTAGTTCAGGGAACGTTGCAAACTATATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACGCTCGAAGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACGCTTCAACAAATGCATCGAATACTGACAACTCGGCAGTCTGCTCGTGCGCTTCTAGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAAAGAGTAA | 999 | 46.95 | MATVGSPMTDISTDGDTDEKSQRSDDRGQTRVMASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEDQNRQMNELRSAVNSHASDPELRIVVDGILAHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 431713 | 438170 | + | Sed0021118.1 | Sed04g0071 | 708674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0071 | 332 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 51 | 66 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0071 | 332 | Pfam | Seed dormancy control | 130 | 205 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed04g0071 | 332 | ProSiteProfiles | DOG1 domain profile. | 113 | 329 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed04g0071 | 332 | MobiDBLite | consensus disorder prediction | 13 | 50 | - | - | |
Sed04g0071 | 332 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 21 | 332 | - | - | |
Sed04g0071 | 332 | SMART | brlzneu | 44 | 107 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0071 | 332 | FunFam | BZIP family transcription factor | 47 | 96 | - | - | |
Sed04g0071 | 332 | Coils | Coil | 67 | 94 | - | - | |
Sed04g0071 | 332 | Gene3D | - | 47 | 99 | - | - | |
Sed04g0071 | 332 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Sed04g0071 | 332 | SUPERFAMILY | Leucine zipper domain | 48 | 91 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0071 | 332 | Coils | Coil | 124 | 144 | - | - | |
Sed04g0071 | 332 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 46 | 90 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0071 | 332 | Pfam | bZIP transcription factor | 48 | 88 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1174 | Sed-Chr3:7331470 | Sed04g0071 | Sed-Chr4:431713 | 5.00E-120 | dispersed | |
Sed04g0071 | Sed-Chr4:431713 | Sed04g2662 | Sed-Chr4:39068829 | 9.00E-143 | dispersed | |
Sed04g0071 | Sed-Chr4:431713 | Sed04g0072 | Sed-Chr4:431713 | 5.10E-146 | tandem | |
Sed03g2282 | Sed-Chr3:17274041 | Sed04g0071 | Sed-Chr4:431713 | 1.30E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37996 | PF14144 | DOG1 | 1.20E-32 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0071 | K14431 | - | csv:101213210 | 556.984 |