Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0072 ATGGCTACTGTTGGCAGTCCCATGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGCCAGAGGTCTGATGATAGAGGCCAAACACGTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAATCTGATCAGAAGACGCTTCGCCGGTTAGCACAAAATCGAGAGGCTGCAAGGAAAAGCCGATTAAGGAAAAAAGCATATGTTCAACAATTAGAGAGCAGTCGCTTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGGCCCATTCAATGAGTGGAAACGGAGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAAGATCAAAACCGTCAGATGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCAGAACTGCGTATTGTAGTTGATGGCATATTGGCTCATTATGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCAAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGCTTTCTTTGGCTTGGTGGTTTTCGCTCTTCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAACAGTTGGTGGGGATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACGTTGTCGAGCGGATCTCTTGGTTCCTCTAGTTCAGGGAACGTTGCAAACTATATGGGTCAAATGGCCATGGCCATGGGTAAACTCGGGACGCTCGAAGGTTTTATACGCCAAGTAAGCCTTTCACTAGTATATACAATATATGAATGTGTGTATTCCCTTAATGCTTTTCTTCATTTTTGGTAA 924 44.91 MATVGSPMTDISTDGDTDEKSQRSDDRGQTRVMASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEDQNRQMNELRSAVNSHASDPELRIVVDGILAHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSGNVANYMGQMAMAMGKLGTLEGFIRQVSLSLVYTIYECVYSLNAFLHFW 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 431713 438170 + Sed0021118.2 Sed04g0072 708675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0072 307 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0072 307 MobiDBLite consensus disorder prediction 13 50 - -
Sed04g0072 307 FunFam BZIP family transcription factor 47 96 - -
Sed04g0072 307 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0072 307 SMART brlzneu 44 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0072 307 ProSiteProfiles DOG1 domain profile. 113 307 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g0072 307 PANTHER TRANSCRIPTION FACTOR TGA9 21 285 - -
Sed04g0072 307 Pfam Basic region leucine zipper 44 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0072 307 CDD bZIP_HBP1b-like 48 100 - -
Sed04g0072 307 Coils Coil 67 94 - -
Sed04g0072 307 Gene3D - 47 99 - -
Sed04g0072 307 MobiDBLite consensus disorder prediction 1 50 - -
Sed04g0072 307 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed04g0072 307 Coils Coil 124 144 - -
Sed04g0072 307 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2282 Sed-Chr3:17274041 Sed04g0072 Sed-Chr4:431713 1.30E-21 dispersed
Sed04g0072 Sed-Chr4:431713 Sed04g2662 Sed-Chr4:39068829 2.30E-116 dispersed
Sed04g0071 Sed-Chr4:431713 Sed04g0072 Sed-Chr4:431713 5.10E-146 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37997 PF14144 DOG1 1.00E-32 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0072 K14431 - csv:101213210 474.552