Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0084 ATGGGAAGAGGTAGGGTTCAATTGAAAAGGATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGATTGATGAAGAAAACTCATGAAATTTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCAACAAAGGAAAGCTCTTTGAATACTCTTCTGATTCCAGCATGGAGAAAATCCTCGAACGATATGAGCGATATTCGTATGTCAGCAGGCAGCAAATCTTAGCTTCTGAAACTGAATTTTCTCAAGAAAATTGGACTATGGAGTATTACCGACTCAAATCCAGAGTCGAAATGTTAGAACGAAACAACAATCATTATATGGGAGAAAATTTGGATTCATTGAGCGTGAAAGAACTGAACAATTTGGAACAACAAATTGACACTGCAATCAAACATGTTCGTTCGAGAAAAAACCAGATGATGTATGATTCCATCTCTGCACTTCAGAGAAAGGAAAAAACAATACAGGAGCAAAATGCCCTACTGGTAAAGCAGATAAAGGAGAAGGAGAAAAGTATTGAAATGGCTCAGCAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCATGTCTTTCTTCTACCCACCACCTCCTCATCCCTCTCTTAACATTGGGCTTGCGAGTTTTGATGGTCGCCCATGA 672 39.73 MGRGRVQLKRIENKINRQVTFSKRKAGLMKKTHEISVLCDAEVALIVFSNKGKLFEYSSDSSMEKILERYERYSYVSRQQILASETEFSQENWTMEYYRLKSRVEMLERNNNHYMGENLDSLSVKELNNLEQQIDTAIKHVRSRKNQMMYDSISALQRKEKTIQEQNALLVKQIKEKEKSIEMAQQAEWEQQQHHGYNAMSFFYPPPPHPSLNIGLASFDGRP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 498590 504835 - Sed0008766.1 Sed04g0084 708687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0084 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed04g0084 223 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Sed04g0084 223 Coils Coil 127 147 - -
Sed04g0084 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g0084 223 Pfam K-box region 87 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g0084 223 Coils Coil 156 187 - -
Sed04g0084 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g0084 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0084 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2282 Sed-Chr1:17231695 Sed04g0084 Sed-Chr4:498590 1.90E-65 dispersed
Sed04g0084 Sed-Chr4:498590 Sed08g2135 Sed-Chr8:35345567 8.40E-68 dispersed
Sed03g2264 Sed-Chr3:17047813 Sed04g0084 Sed-Chr4:498590 6.70E-67 transposed
Sed10g0016 Sed-Chr10:71317 Sed04g0084 Sed-Chr4:498590 7.10E-29 transposed
Sed03g2263 Sed-Chr3:17043008 Sed04g0084 Sed-Chr4:498590 8.50E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37998 PF01486 K-box 3.20E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0084 K09264 - csv:101219414 364.77