Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0091 ATGTCTTCCGCCGAGAAAGAGAGAGAAACCCAGGTTTACATGGCCAAGCTTTCCGAGCAGGCCGAGCGATACGACGAAATGGTTGAGTGTATGAAGAACATTGCAAAGCTTGACCTCGAACTAACTGTGGAGGAGAGGAACCTTCTTTCTGTGGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATCGAGCAGAAAGAGGAGTCGAAAGGGAGCGAGAACACTGTAAAATTGATAAAGGGTTACCGCCAGAAAGTAGAGGAGGAGCTTTCAAAGATTTGTGGTGATATTCTCTCTATCATAGACAAGCATCTTGTCCCCCATTCATCCTCTGCTGAAGCCACGGTTTTCTACTACAAGATGAAAGGTGATTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAGTCATTGAAGGGATATGAGGCTGCCTTAGGCTCTGCGAATACTGACCTACCATCAACCCACCCCATCCGTCTTGGCCTTGCACTCAATTTTTCTGTCTTCTACTATGAGATCATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACATTGAGTGAGGAATCATACAAGGACAGCACTTTGATCATGCAGCTGTTGAGAGACAACCTCACTCTCTGGACCTCAGATTTGCCTGAAGATGGCGGCGAGGAGAACTCGAAAGCTGAGGATTCCAAGCCCGCTGAACCAGAGCAGCAAGCCAAATGA 792 46.59 MSSAEKERETQVYMAKLSEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGSENTVKLIKGYRQKVEEELSKICGDILSIIDKHLVPHSSSAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAALGSANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENSKAEDSKPAEPEQQAK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 543909 548538 + Sed0009674.1 Sed04g0091 708694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Sed04g0091 263 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Sed04g0091 263 Coils Coil 14 34 - -
Sed04g0091 263 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed04g0091 263 MobiDBLite consensus disorder prediction 237 263 - -
Sed04g0091 263 MobiDBLite consensus disorder prediction 242 263 - -
Sed04g0091 263 Gene3D - 1 250 IPR036815 -
Sed04g0091 263 PIRSF 14-3-3 2 252 IPR000308 -
Sed04g0091 263 FunFam 14-3-3 protein epsilon 3 250 - -
Sed04g0091 263 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Sed04g0091 263 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Sed04g0091 263 Pfam 14-3-3 protein 14 236 IPR023410 -
Sed04g0091 263 SMART 1433_4 8 249 IPR023410 -
Sed04g0091 263 Coils Coil 196 216 - -
Sed04g0091 263 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2568 Sed-Chr3:41061357 Sed04g0091 Sed-Chr4:543909 7.00E-138 dispersed
Sed03g2569 Sed-Chr3:41061357 Sed04g0091 Sed-Chr4:543909 1.40E-124 dispersed
Sed04g0091 Sed-Chr4:543909 Sed07g1991 Sed-Chr7:34846116 2.60E-124 dispersed
Sed04g0091 Sed-Chr4:543909 Sed04g0092 Sed-Chr4:543909 1.80E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0091 K06630 - csv:101221858 497.278