Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0092 ATGTCTTCCGCCGAGAAAGAGAGAGAAACCCAGGTTTACATGGCCAAGCTTTCCGAGCAGGCCGAGCGATACGACGAAATGGTTGAGTGTATGAAGAACATTGCAAAGCTTGACCTCGAACTAACTGTGGAGGAGAGGAACCTTCTTTCTGTGGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATCGAGCAGAAAGAGGAGTCGAAAGGGAGCGAGAACACTGTAAAATTGATAAAGGGTTACCGCCAGAAAGTAGAGGAGGAGCTTTCAAAGATTTGTGGTGATATTCTCTCTATCATAGACAAGCATCTTGTCCCCCATTCATCCTCTGCTGAAGCCACGGTTTTCTACTACAAGATGAAAGGTGATTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAGTCATTGAAGGGATATGAGGCTGCCTTAGGCTCTGCGAATACTGACCTACCATCAACCCACCCCATCCGTCTTGGCCTTGCACTCAATTTTTCTGTCTTCTACTATGAGATCATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACATTGAGTGAGGAATCATACAAGGACAGCACTTTGATCATGCAGCTGTTGAGAGACAACCTCACTCTCTGGACCTCAGATTTGCCTGAAGATGGCGGCGAGGAGAACTCGAAAGCTGAGGATTCCAAGCCCGCTGAACCAGAGCAAGCCAAATGA 789 46.51 MSSAEKERETQVYMAKLSEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGSENTVKLIKGYRQKVEEELSKICGDILSIIDKHLVPHSSSAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAALGSANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENSKAEDSKPAEPEQAK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 543909 548538 + Sed0009674.2 Sed04g0092 708695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Sed04g0092 262 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Sed04g0092 262 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed04g0092 262 Coils Coil 14 34 - -
Sed04g0092 262 MobiDBLite consensus disorder prediction 242 262 - -
Sed04g0092 262 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Sed04g0092 262 Pfam 14-3-3 protein 14 236 IPR023410 -
Sed04g0092 262 Gene3D - 1 250 IPR036815 -
Sed04g0092 262 FunFam 14-3-3 protein epsilon 3 250 - -
Sed04g0092 262 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Sed04g0092 262 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Sed04g0092 262 PIRSF 14-3-3 2 252 IPR000308 -
Sed04g0092 262 SMART 1433_4 8 249 IPR023410 -
Sed04g0092 262 Coils Coil 196 216 - -
Sed04g0092 262 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0092 Sed-Chr4:543909 Sed07g1991 Sed-Chr7:34846116 2.50E-124 dispersed
Sed04g0091 Sed-Chr4:543909 Sed04g0092 Sed-Chr4:543909 1.80E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0092 K06630 - csv:101221858 495.738