Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0119 ATGGCGGCTTTTTCTCTCTCTAACTACACCCTCTTCTCTCCTCGCCCTTCTACTTCCTCCAAAACCCTAGAATCCACATCCCCGATTCTTCCTAATCCTCGCCATCGCTGTAATCCATTGTTAAGTTTCTCTTCTACCTCTATTTCTTCTCAACTCGGACGTTCGTTCATGCCGTGTCTTTCTGCTCCAGATTCTGCTCCCATTGTAAATAAAGAAGAGGATGATCAAAAGGTCGGAGATAAAGCAGGAGATCAGCTTCATGGATTGAGTTTGCAGGCACTCATCAATGTATACCGAGAAGCGTTTCTTGACGGAGATCAAAAGACTGTTTCTGAAGTTGAAGCAAGACTAAGAATAATTGAGAGGGAAAAGGATGGGTTGTTCCAGAAAGTGTCCAATATAACAGCAGAGATAACATCAGGAAAAGAGAAATATATACGCTTACAAGCCGATTTTGATAATTTCAGGAAAAGATCAGAAAAAGATGGATATACCGTGAAGAATAATGCGCAAAAAGAGGTTATTGGGAGTCTGTTACCGATGATTGACAATTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGATAAGGAGAAAAAGATTGATGTAAGCTACCAGGGTATATACAAGCAATTAGTGGAGACGTTGAGGAGCTGGCGCGTCTCTGCTGTTGCCGCAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAATCACAGGAGATCAAGGAAGGAATCATTATTCAAGAAATACGACGCGGGTTTCTGCTCGGTGAACGAGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAAGTAGGAAGAATTCCCCCACAATTGTCTCCGAGCAACCGGCAACTGCTGCTGGACTAGATGATCGCTAA 906 42.94 MAAFSLSNYTLFSPRPSTSSKTLESTSPILPNPRHRCNPLLSFSSTSISSQLGRSFMPCLSAPDSAPIVNKEEDDQKVGDKAGDQLHGLSLQALINVYREAFLDGDQKTVSEVEARLRIIEREKDGLFQKVSNITAEITSGKEKYIRLQADFDNFRKRSEKDGYTVKNNAQKEVIGSLLPMIDNFEKARQQIVPQTDKEKKIDVSYQGIYKQLVETLRSWRVSAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQEIRRGFLLGERVLRPARVKVSKGPSRKNSPTIVSEQPATAAGLDDR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 745254 749390 - Sed0015738.1 Sed04g0119 708722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0119 301 FunFam Protein GrpE 221 276 - -
Sed04g0119 301 Hamap Protein GrpE [grpE]. 70 277 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 MobiDBLite consensus disorder prediction 274 301 - -
Sed04g0119 301 Gene3D - 106 218 IPR013805 -
Sed04g0119 301 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 127 219 IPR013805 -
Sed04g0119 301 CDD GrpE 142 275 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 Coils Coil 103 130 - -
Sed04g0119 301 PRINTS GrpE protein signature 146 162 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 PRINTS GrpE protein signature 229 244 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 PRINTS GrpE protein signature 256 275 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 PRINTS GrpE protein signature 174 189 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 Pfam GrpE 126 277 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Sed04g0119 301 Gene3D Head domain of nucleotide exchange factor GrpE 222 277 IPR009012 GO:0006457(InterPro)
Sed04g0119 301 PANTHER GRPE PROTEIN 87 277 IPR000740 GO:0000774(PANTHER)|GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0042803(InterPro)|GO:0051082(PANTHER)|GO:0051087(InterPro)
Sed04g0119 301 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 224 279 IPR009012 GO:0006457(InterPro)
Sed04g0119 301 ProSitePatterns grpE protein signature. 232 275 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0119 K03687 - - csv:101215875 406.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0119 Sed-Chr4:745254 Sed14g0738 Sed-Chr14:7647472 1.60E-45 dispersed
Sed04g0119 Sed-Chr4:745254 Sed03g2081 Sed-Chr3:14955926 7.10E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28