Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0120 ATGGACCGGAATCTATGGCAGGCTTTTGCCGGTAAGTCTGTCCAAACTCACACTGTCGGTTCTGAGGTTTATTATTTTGCTCAAGGTCATGTCGAGCATTCTACACATGTTCCATTGATTTCGCAATCTGTTTACTCTAATCCTGGTGCTAAATGTATCGTTACTGGCGTTGATTATCATGCCGATCCTCTTAGTGATGAGATGTTTGTTAAGTTGAATCTTCATCCTATTCGCCGTGGCGAGGATGGTTCTGAAGTTGTGCCTGTTTTGGATTCGCGATTCGGTGTTTGTGATGATAGTGGTGTGGAGAGGGATAAGATTGATTCGTTTGCTAAGATTCTTACGCCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTACTGTGCGGACTCTATTTTTCCTCCCTTGAATTACCAGGATGATCCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTGTTTACTTTTCGACATATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAGTTCGTTAATCAGAAGATGCTGGTTTCTGGTGATTCGGTTGTTTTTGCGAAGAATTCGCGAGGGGATATGTTTGTTGGCATTCGTCGCCGTGCCCCATCCACGAGGTCTATTATTGGAGGCATTGATTGCAGCAGTTGGAATAGCCAGATCGGTGGAGTTAGCCATAGTGTGGAGGAAAATTGCTCTGGAGATGTAGGGAGAAAAGTTTTCTCCAGGAGTATTGTTGGGAAGGTGCCGGCCGAGTCGGTTGCCAATGCTGCAGAATTGGCTTCCCAGTTTAAGCCATTCGAATTGGTTTATTATCCTAGGGTTGGCCGGTCGGATTTTGTTGTTCACGCCGAGAAGGTGAACCGATCAATGCATTACCAGTGGTTTTCTGGAATAAGAGTGAAAATGGCCGTGGAGACCGAGGATTCTTCTAAGACAACATGGTATCAAGGGACTATAACCTCGGCATCTCTTCCCGAGCAAGGTCCTTGGAAGCGTTCTCCATGGCGCATGCTTGAGGTTTCATGGGATGAATCTGATGCTCTGCAGAATGCTAAGTATGTAAGCCCTTGGGAAGTTGAGTTTGCAACGCCCACTCCTCCAATACAACCTCCTCTTCACCCAGCAAAGAGATTTAAAGGTCTTCCGATTTCGATATCGGGGCTGCTGAATGGTGAAACCGAGATGTTTTCACCTATGATGAGTTTTAGTGATTCAACAATGGAACAATTCCACCCTTCATTGTTGAATTTCAACTCTTTACCTGCTGGCATGCAGGGAGCCAGGCAAAATTTATTCCATGAATCTAGGTTGTTCAATCGGTATAAAGAAATTTCTCCTCTAACATATGTTCAAGGTTCCATGAGTAATCCGAATGTCGTGACGAATACACCGAATGTGTCTACCGACCTCCTTATTGGTAACGCGCAGTCTGATACCTTTTCACCTGATAGTCAGGCCAGTGTTCTTTCCTATGCCACAGAAACTGCTGAGAACCAGATCTGCAACTTAGCTAAAGCTGGAGTAAATTCAATTCAGCTGTTTGGCAAAGTCATCTATATGAATCAGACTGTTGAAATTGGACTTGACAAAGATGTTAACACTAATGATGGCGACAAGAACCCGAGTCTTTGA 1665 45.11 MDRNLWQAFAGKSVQTHTVGSEVYYFAQGHVEHSTHVPLISQSVYSNPGAKCIVTGVDYHADPLSDEMFVKLNLHPIRRGEDGSEVVPVLDSRFGVCDDSGVERDKIDSFAKILTPSDANNGGGFSVPRYCADSIFPPLNYQDDPPVQTLSITDVHGVVFTFRHIYRGTPRRHLLTTGWSKFVNQKMLVSGDSVVFAKNSRGDMFVGIRRRAPSTRSIIGGIDCSSWNSQIGGVSHSVEENCSGDVGRKVFSRSIVGKVPAESVANAAELASQFKPFELVYYPRVGRSDFVVHAEKVNRSMHYQWFSGIRVKMAVETEDSSKTTWYQGTITSASLPEQGPWKRSPWRMLEVSWDESDALQNAKYVSPWEVEFATPTPPIQPPLHPAKRFKGLPISISGLLNGETEMFSPMMSFSDSTMEQFHPSLLNFNSLPAGMQGARQNLFHESRLFNRYKEISPLTYVQGSMSNPNVVTNTPNVSTDLLIGNAQSDTFSPDSQASVLSYATETAENQICNLAKAGVNSIQLFGKVIYMNQTVEIGLDKDVNTNDGDKNPSL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 751296 754947 - Sed0017908.1 Sed04g0120 708723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0120 554 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 535 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed04g0120 554 SMART B3_2 110 212 IPR003340 GO:0003677(InterPro)
Sed04g0120 554 FunFam Auxin response factor 108 212 - -
Sed04g0120 554 SUPERFAMILY DNA-binding pseudobarrel domain 106 210 IPR015300 -
Sed04g0120 554 CDD B3_DNA 109 210 IPR003340 GO:0003677(InterPro)
Sed04g0120 554 Gene3D - 107 212 IPR015300 -
Sed04g0120 554 Pfam Auxin response factor 267 349 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed04g0120 554 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677(InterPro)
Sed04g0120 554 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677(InterPro)
Sed04g0120 554 Gene3D - 305 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0120 K14486 - - csv:101216118 710.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0120 Sed-Chr4:751296 Sed14g0406 Sed-Chr14:4240115 2.30E-90 dispersed
Sed04g0120 Sed-Chr4:751296 Sed01g2849 Sed-Chr1:23945631 5.20E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38000 PF02362 B3 5.60E-20 CL0405 Sed TF