Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0122 ATGGCATTGCAGAATATTGGTGCCTCGAACCGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGGTTACTAAAATTGAAGGCAGAGGTAATGGCATCAAAACTAATGTCGTTAATATGGTTGAGATTGCAAAAGCCTTGGGCAGGCCTGCTTCGTACACTACCAAGTACTTTGGATGTGAGCTTGGGGCACAATCCAAATTCGATGAGAAAACTGGGGTTTCTCTTGTAAATGGTGCCCATGAAACACCAAAGCTGGCTGGTCTTCTCGAGAACTTCATTAAGAAATATGTTCAATGCTATGGATGTGGTAACCCTGAAACTGAGATAATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCAGATGTTGACATGAGAGATAAACTCACAACGTTTATTATCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGGCTTAAAGAGGGAGAGGCTGCTGATGAGGAACAAAAGAAGCTGAAAAAGGATTCGGTGAAGAAGAAAAGCACCAGTGCTGGTACAAAGGATGCTGTTACCAAAGTGCCAAGCAAGAAGAAGAGTAATAGCTCTGATGAAGATCATTCCCCCACTCGTAACCAAGCTTATGATAATGACCCAGCTGATGACGACGACGAAGTGGAGTGGCAAACAGACACATCTTTAGAGGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCAGTCACGGCTGATATGGTCATGCTCTCGACCATGGAAGAGAATAAGTCGACAAAGAAGTCCCCAGAGCATGAGAAGTCTGCCGTCAATGAAAACAAGAATGGAAATGGAGTTTCTACCCACGGCGCCCTTGTTCATGAGATCAAAGATTATTTGAAGAAAGGCTCCTCTGCTGCTGACCTTAAATCGTTTTTGGAATCACATGCAGGAACTCGCCAAGAGATTGTGAATGCCTTAGTTGAGGCTCTTTTTGATGGTGTTGGGAAAGGCTTCTCAAAGGAGGCGGTGAAGAAAAAGAACTTCTTGGCTGCAGCTGCTGCTCAGGAGGGATCACAGATAATCCTTTTGCGCGCGATTGAATCTTTCTGTGTCAATACAAGTCCGGAGGCTGCGAAGGAGGTTGCTCTGGTCCTGAAATCATTATACGATGGTGATGTGATCGAGGAGGAATTTGTCTTAGAGTGGTACCAGCAAGGCATCGCCGGTGCTAACAAAAGTTTGCAGATCTGGAAGCATGTTAAGCCCTTCATCGAATGGCTCCAGAGTGCCGAGTCCGAGTCGGAAGAAGAGTAA 1332 45.27 MALQNIGASNRDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGVSLVNGAHETPKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFIIKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKSTSAGTKDAVTKVPSKKKSNSSDEDHSPTRNQAYDNDPADDDDEVEWQTDTSLEAAKQRIQEQLSAVTADMVMLSTMEENKSTKKSPEHEKSAVNENKNGNGVSTHGALVHEIKDYLKKGSSAADLKSFLESHAGTRQEIVNALVEALFDGVGKGFSKEAVKKKNFLAAAAAQEGSQIILLRAIESFCVNTSPEAAKEVALVLKSLYDGDVIEEEFVLEWYQQGIAGANKSLQIWKHVKPFIEWLQSAESESEEE 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 786936 790035 - Sed0014214.1 Sed04g0122 708725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0122 443 Gene3D - 2 104 - -
Sed04g0122 443 Coils Coil 159 179 - -
Sed04g0122 443 CDD W2_eIF5 292 436 - -
Sed04g0122 443 SUPERFAMILY ARM repeat 296 437 IPR016024 -
Sed04g0122 443 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Sed04g0122 443 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0122 443 SMART 542_3 352 439 IPR003307 GO:0005515(InterPro)
Sed04g0122 443 Gene3D - 291 443 - -
Sed04g0122 443 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0122 443 Gene3D - 105 145 - -
Sed04g0122 443 MobiDBLite consensus disorder prediction 269 283 - -
Sed04g0122 443 Pfam eIF4-gamma/eIF5/eIF2-epsilon 365 443 IPR003307 GO:0005515(InterPro)
Sed04g0122 443 MobiDBLite consensus disorder prediction 199 219 - -
Sed04g0122 443 MobiDBLite consensus disorder prediction 266 292 - -
Sed04g0122 443 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 439 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Sed04g0122 443 MobiDBLite consensus disorder prediction 148 190 - -
Sed04g0122 443 ProSiteProfiles W2 domain profile. 266 443 IPR003307 GO:0005515(InterPro)
Sed04g0122 443 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0122 443 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0122 443 MobiDBLite consensus disorder prediction 143 233 - -
Sed04g0122 443 FunFam Eukaryotic translation initiation factor 5 105 145 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0122 K03262 - csv:101210873 762.296