Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0128 ATGGCTGCTGCAGTATTTAACCAATCTCTTGGGACTTTTCTTCCCCATGGACAAGCTAATAGTACTACTAATTTGACAAAATTGAATGCAAAGTGCTTCAAGGTTGAAGTTGGGATCTTCAGAAAGAAGTCTTCTAGATCTGGAAGTACTAATATAAGAGCAATTCAAGCTTCTTCTTCTTCTCAAACTTCAGTTTTTGATCCCATTTCGTCGCCTTCAATCAACACGGCTGGTAACTCGCAGAAAAAACAGAATGAAGCAGCCTTGATCTTGATTCGGCATGGAGAATCATTGTGGAACGAAAAGAACTTATTTACTGGCTGTGTTGATGTGCCACTTACCAAGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAACATACCTGTCGACATGATCTATACTTCTTCGCTCATTCGCGCTCAGATGACTGCTATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAGTTATTATTCATAATGAAACCGAGCAGGCAAGGGTTTGGAGTGAAATATTTAGTGAAGAAACCAAAAAACAATCCATCCCAGTAATAGCATCTTGGCGATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAACAGGAGACTGCTGATAGATATGGAAAACAACAAGTCCACGAATGGCGTCGGAGTTATGATGTTCCTCCCCCAAATGGCGAGAGTTTGGAAATGTGTGCGGAGAGAGCTGTTGCTTATTTTAAAGATCAAATTGTTCCACAGCTGCAATCTGGAAAGAATGTTATGATTGCTGCACATGGAAATTCATTGAGGTCCATAATCATGTACCTAGACAAACTAACTTCTCAAGAGGTTATTAGCTTAGAGCTATCAACTGGAATACCCATGCTCTACATATTTAAAGAAGGAAACTTCATTAGGAGGGGAAGTCCTGCAGGGCCTTCCGAGGCAGGCGTTTACGCTTATACCAGGAGTTTGGCTCTCTATAGACAAAAGTTAGATGATATGTTAAACTAA 1020 41.18 MAAAVFNQSLGTFLPHGQANSTTNLTKLNAKCFKVEVGIFRKKSSRSGSTNIRAIQASSSSQTSVFDPISSPSINTAGNSQKKQNEAALILIRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTQHRRKKVPVIIHNETEQARVWSEIFSEETKKQSIPVIASWRLNERMYGELQGLNKQETADRYGKQQVHEWRRSYDVPPPNGESLEMCAERAVAYFKDQIVPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGNFIRRGSPAGPSEAGVYAYTRSLALYRQKLDDMLN 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 807136 810518 + Sed0027122.1 Sed04g0128 708731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0128 339 PANTHER PHOSPHOGLYCERATE MUTASE 83 327 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Sed04g0128 339 SMART PGAM_5 88 274 IPR013078 -
Sed04g0128 339 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 86 313 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Sed04g0128 339 Gene3D - 78 311 IPR029033 -
Sed04g0128 339 Pfam Histidine phosphatase superfamily (branch 1) 181 292 IPR013078 -
Sed04g0128 339 Pfam Histidine phosphatase superfamily (branch 1) 89 165 IPR013078 -
Sed04g0128 339 SUPERFAMILY Phosphoglycerate mutase-like 89 305 IPR029033 -
Sed04g0128 339 CDD HP_PGM_like 89 308 IPR013078 -
Sed04g0128 339 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 91 100 IPR001345 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0128 K01834 - - csv:101211372 621.698
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002531 1 2 1 1 1 1 3 1 1 2 1 2 3 2 2 3 2 4 3 2 2 2 2 2 1 2 2 1 5 1 58