Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0131 ATGGCTGCTTTGATGGATTTCTATGGTTGCAGAGATTTTCAGTCTGATCCATTAGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCTTCTCCTTGTTCTTCTTCTTTTGTTCCTGATTTTTCTTCTTCATTCCAAGCTGAATCTACTTCTTTCCCTTCCGATTGTTCTTCTCCGATGACCTACTTATTTTCCGACGGGTTTTCGGCTCAGAACCTTCACGGTTTGGATCAATCGGCTTCGATCGGACTCAGTTACTTGGATCCGTTTCAGATCCAGCAGCTCCAGTCGCAAATCGGTTACCAGGCTCAGATCCAGCCGGTTTGGGGACGGATCGACCATCAGATCAGCAACCAGATCGGTGTAAAGGCGATTCCGATGAAACGAACGGGATCTCCGGCGAAATCGACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAGTGGGTGGCGGAGATCCGGCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCTTTGGCCTACGACAAAGCCGCTTACAAGCTCCGCGGCGATTTCGCTCGGCTTAATTTCCCTCACCTGAAGCACCACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCCAAGCTCGACGCCATCTGCCAAAACCTTGCCGAGTCGCAAAAACAGGGGAAGTCGAACCGATCTGCCTCAGCGAAGAAGGCGAAATCATCGCCGGCGACGGTGGTTGATTCCGACGATGACGTGAAGGCGGTGGAGGTCGGATCGAGTGGATCGGAGATCAAGGCGGAGGAGGACTCCTCGTCGCCGGTTTCCGCCGTGAGCGACGAGTCGGCAGAGTCTTCGCCGTTGTCGGATCTGACGTTCCCCGATCTGACGGATTCGCCATGGGAGTCGCCGTCGGAAAGCTCTTTGTTGCAGAAATATCCGTCTGAAATCGATTGGGCTTCGATTTTCACTTCTTGA 1017 53.98 MAALMDFYGCRDFQSDPLGGELMEALEPFMKAASSPCSSSFVPDFSSSFQAESTSFPSDCSSPMTYLFSDGFSAQNLHGLDQSASIGLSYLDPFQIQQLQSQIGYQAQIQPVWGRIDHQISNQIGVKAIPMKRTGSPAKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLDAICQNLAESQKQGKSNRSASAKKAKSSPATVVDSDDDVKAVEVGSSGSEIKAEEDSSSPVSAVSDESAESSPLSDLTFPDLTDSPWESPSESSLLQKYPSEIDWASIFTS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 867807 869797 + Sed0014356.1 Sed04g0131 708734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0131 338 Pfam AP2 domain 143 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 MobiDBLite consensus disorder prediction 236 255 - -
Sed04g0131 338 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 SMART rav1_2 143 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677(InterPro)
Sed04g0131 338 CDD AP2 142 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0131 338 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 335 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed04g0131 338 MobiDBLite consensus disorder prediction 236 322 - -
Sed04g0131 338 MobiDBLite consensus disorder prediction 278 322 - -
Sed04g0131 338 FunFam Ethylene-responsive transcription factor 2 142 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0131 Sed-Chr4:867807 Sed12g1433 Sed-Chr12:11968969 2.80E-83 dispersed
Sed04g2065 Sed-Chr4:35017164 Sed04g0131 Sed-Chr4:867807 6.10E-32 transposed
Sed10g0864 Sed-Chr10:6490632 Sed04g0131 Sed-Chr4:867807 2.70E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38001 PF00847 AP2 4.30E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0131 K09286 - csv:101222833 460.299