Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0139 ATGTCGCATTTCGGAAGATCGGGTCCTCCCGATATCAGAGATACATATTCCCTTCTCGTTCTCAACATCACTTTCCGCACCACCGCCGATGATCTTTACCCCCTTTTTGACAAGTATGGAAAAGTCGTCGACGTCTTTATCCCCAGAGACCGCAGAACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGATGAAGCTCAGAAGGCTGTTGATAAGCTTGATGGACGAATGGTGTATGGTAGAGAAATTATGGTTCAATTCGCGAAGTATGGTCCAAATGCTGAGAAAATTCGCAAGGGGAGGGTGACGGAGTCAACGTCGAAGATAAGGGGACGGTCTAGAAGTCGCAGTCCACGTCCAAGGCATCGTGATGACTACAGGGATAGGGATTACAGGCGAAGAAGCCGCAGTAGAAGCAGGGAGAGATATGAACGTGATAGACCCTATAGAAGTGAGAGAGAACGCCATCGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGTAGGAGGGGAAGAGATGATGATGAACGGCGTAGTGCTAGCCTTTCTGATAGAAGCATGTCTCCCACCCGACATTCCCCTGATGCGCGCCGAAGTACATCTCCGCGTAAGATTTCATCTAGGAGTAGAAGTGACGACGAACATTCGCCAAATCGAGATAATGGCTCACCAGATGATAAATCATATGATTCTCGTAGTCCATCTCCTGCTAAATCTGATGCTGATGAATGA 753 47.94 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDKLDGRMVYGREIMVQFAKYGPNAEKIRKGRVTESTSKIRGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERYERDRPYRSERERHRSRSRSASPDRNKDRRRGRDDDERRSASLSDRSMSPTRHSPDARRSTSPRKISSRSRSDDEHSPNRDNGSPDDKSYDSRSPSPAKSDADE 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 938855 943784 - Sed0004939.1 Sed04g0139 708742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0139 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723(InterPro)
Sed04g0139 250 MobiDBLite consensus disorder prediction 122 189 - -
Sed04g0139 250 Pfam RNA recognition motif 18 87 IPR000504 GO:0003723(InterPro)
Sed04g0139 250 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676(InterPro)
Sed04g0139 250 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 9 240 IPR051106 -
Sed04g0139 250 MobiDBLite consensus disorder prediction 102 250 - -
Sed04g0139 250 CDD RRM_SRSF2_SRSF8 18 90 - -
Sed04g0139 250 MobiDBLite consensus disorder prediction 197 250 - -
Sed04g0139 250 SMART rrm1_1 17 90 IPR000504 GO:0003723(InterPro)
Sed04g0139 250 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Sed04g0139 250 Gene3D - 4 105 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0139 K12891 - - csv:101216322 338.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0139 Sed-Chr4:938855 Sed10g1849 Sed-Chr10:35432361 4.40E-49 dispersed
Sed04g0139 Sed-Chr4:938855 Sed06g0962 Sed-Chr6:12744679 7.20E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g401 . Blo12g00705 . Bda03g00492 Bpe02g00103 Bpe04g00448 . Bma01g02615 Cmo05g00520 Cmo12g00119 . . . Car12g00143 Sed04g0139 . Cpe07g00130 Bhi04g00752 Tan02g2384 Cmetu03g0980 . Hepe10g0506 . Lcy13g1568 Cla08g01104 Cam08g1557 Cec08g1130 Cco08g1257 Clacu08g1259 . Cre08g1041 . . Cone17ag1223 Cone20ag0501 . . . Cme03g01517 . Blo18g00134 Bda11g00763 . . . . . . . . Cma12g00154 Cma05g00497 Car05g00445 . Cpe11g00435 . . . . . . . . . . . . . . . Lsi08g00960 . Chy03g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001751 2 2 2 1 2 2 4 2 2 1 2 2 3 2 2 2 2 4 4 2 2 2 2 2 2 2 1 4 5 1 68