Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0158 ATGGCCGCCGCCGCCCCCTCTGTCCGCGAGGAGAACGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCTCTCGACAAGGAGGAACTCACCGTCGAGGAGCGCAACCTCCTCTCCGTCGCTTACAAGAACGTCATCGGCGCTCGCAGAGCTTCCTGGCGTATCATCTCCTCCATTGAGCAGAAGGAGGAGAGCCGAGGTAACGACGATCACGTCTCCGTCATCCGCGAGTATAGATCCAAAATCGAGAAGGAGCTCTCTGATATCTGCGATGGAATCCTTAAGCTTCTTGATTCTAGACTCATTCCATCGGCTGCGTCTGGAGATTCTAAGGTGTTTTACCTTAAGATGAAGGGCGATTATCATCGATATCTGGCTGAGTTCAAAACCAGCGCTGAAAGGAAGGAAGCCGCTGAAAGTACCCTCACTGCTTACAAGGCTGCTCAGGATATTGCAAATGCTGAGTTGCCCCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTTTCTGTGTTTTACTATGAAATTTTGAATTCTCCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATTGCTGAATTGGATACCCTCGGCGAGGAATCCTACAAAGATAGTACTTTGATTATGCAACTTCTCCGTGACAACCTCACTCTCTGGACCTCGGACATGCAGGACGAGGGCGCCGATGAGATTAAAGAAGCTCCCGCCGCCAAGCGCGAGGATGAAAAGCAGTGA 792 51.64 MAAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIEKELSDICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTSAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDEGADEIKEAPAAKREDEKQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1074549 1077145 + Sed0008660.1 Sed04g0158 708761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0158 263 Coils Coil 15 42 - -
Sed04g0158 263 PIRSF 14-3-3 3 251 IPR000308 -
Sed04g0158 263 SUPERFAMILY 14-3-3 protein 9 241 IPR036815 -
Sed04g0158 263 Gene3D - 1 252 IPR036815 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 92 116 IPR000308 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 158 184 IPR000308 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 185 211 IPR000308 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 123 145 IPR000308 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 43 72 IPR000308 -
Sed04g0158 263 PRINTS 14-3-3 protein zeta signature 212 241 IPR000308 -
Sed04g0158 263 Pfam 14-3-3 protein 15 239 IPR023410 -
Sed04g0158 263 SMART 1433_4 9 252 IPR023410 -
Sed04g0158 263 ProSitePatterns 14-3-3 proteins signature 1. 49 59 IPR023409 -
Sed04g0158 263 ProSitePatterns 14-3-3 proteins signature 2. 221 240 IPR023409 -
Sed04g0158 263 PANTHER 14-3-3 PROTEIN 9 244 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed04g0158 263 FunFam 14-3-3 protein epsilon 6 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0158 Sed-Chr4:1074549 Sed06g0910 Sed-Chr6:11278689 2.30E-117 dispersed
Sed10g1197 Sed-Chr10:21811597 Sed04g0158 Sed-Chr4:1074549 7.20E-127 transposed
Sed13g2141 Sed-Chr13:26046387 Sed04g0158 Sed-Chr4:1074549 1.60E-123 wgd
Sed04g0158 Sed-Chr4:1074549 Sed05g1594 Sed-Chr5:29693563 3.50E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0158 K06630 - csv:101220164 489.574