Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0166 ATGGCCGCTACAACGAACAGAAAGCTTTTCCCTACAAGCTACCAACAACAACAACCCACCAACTGCTCCTCCTGCCCGTACGACTGCCCGTTCGACTGCTACGCCGTGCCCGACTTCTTCTTCTCGCCGCCGCCGCCGCCCGCCGACGACCGCCAAACCCATCTCCAACCATTAGTCATAATCCTAATTGCTCTGTTCGTTTTCTTCTTCTTCGCTTTCATCTTCTACACCATCGTCGTTAAATTCCGGTCTCGGGCGACCGGAACCGGAAGCAGGGGAGCAGCGCCGCCGCGATCAGACGGCGGAGAGGCAGAGTATCTGACCGGAAATCAGATCGATCATCCGATTTGGTTCATCACAACTTCCGGGCTGCAACAATCGGTGATCAATTCAATCACAGTTTGCAAATACGAGAAGAACTCGGGGTTAATCGAAGTAACGGATTGCTCTGTTTGTTTGAGCGAATTCGAAGAAGGAGAAATGCTGAGATTGTTGCCGAAATGCAGCCATGCGTTTCATATCGGTTGCGTCGATACTTGGCTTAGAACACACACAACTTGCCCTTTGTGTCGAGCCCACATTGTTAATGATTTTGCGAGCGCTAATTCGAATTTGGGTTCTGTGAATCAAAACGAAGGTGATTTGATTGTGATGGAAGAAACCCAGATTGAGAATGGGGAAATTTTGAGCGAAAACAGGGGAGATTTTGTCGATGAACAGAGTGAAGAGATTGTTCCAAAAGATGGGGAAATGGAAGGAAATGGGAGTGTGAGGAGGAATAATGAGATGGATTCTTCTTCTTGA 804 48.63 MAATTNRKLFPTSYQQQQPTNCSSCPYDCPFDCYAVPDFFFSPPPPPADDRQTHLQPLVIILIALFVFFFFAFIFYTIVVKFRSRATGTGSRGAAPPRSDGGEAEYLTGNQIDHPIWFITTSGLQQSVINSITVCKYEKNSGLIEVTDCSVCLSEFEEGEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIVNDFASANSNLGSVNQNEGDLIVMEETQIENGEILSENRGDFVDEQSEEIVPKDGEMEGNGSVRRNNEMDSSS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1126827 1128119 + Sed0004276.1 Sed04g0166 708769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0166 267 MobiDBLite consensus disorder prediction 233 267 - -
Sed04g0166 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 199 IPR013083 -
Sed04g0166 267 FunFam RING-H2 finger protein ATL43 124 197 - -
Sed04g0166 267 MobiDBLite consensus disorder prediction 233 257 - -
Sed04g0166 267 Pfam Ring finger domain 148 191 IPR001841 -
Sed04g0166 267 SMART ring_2 149 190 IPR001841 -
Sed04g0166 267 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Sed04g0166 267 PANTHER RING-H2 FINGER PROTEIN ATL16 42 221 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed04g0166 267 CDD RING-H2_EL5-like 148 191 - -
Sed04g0166 267 SUPERFAMILY RING/U-box 135 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0166 Sed-Chr4:1126827 Sed10g1872 Sed-Chr10:35599711 4.70E-33 dispersed
Sed04g0166 Sed-Chr4:1126827 Sed04g0169 Sed-Chr4:1165096 1.30E-14 proximal
Sed01g1085 Sed-Chr1:8193120 Sed04g0166 Sed-Chr4:1126827 3.10E-13 transposed
Sed10g1000 Sed-Chr10:8616777 Sed04g0166 Sed-Chr4:1126827 3.30E-12 transposed
Sed10g0839 Sed-Chr10:6178612 Sed04g0166 Sed-Chr4:1126827 1.50E-28 wgd
Sed14g0988 Sed-Chr14:19227405 Sed04g0166 Sed-Chr4:1126827 2.70E-29 wgd
Sed04g0166 Sed-Chr4:1126827 Sed05g1575 Sed-Chr5:29543498 6.20E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29